miRNA display CGI


Results 21 - 40 of 67 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7025 5' -47 NC_001875.2 + 50976 0.68 0.998575
Target:  5'- ------uUGGCGCGCGCCGagUCGc-- -3'
miRNA:   3'- gauuuuuAUCGUGCGCGGCa-AGCucu -5'
7025 5' -47 NC_001875.2 + 89479 0.68 0.998271
Target:  5'- -cAAAAGUGGCGCccucGCGCCGcaaccgcUUGGGAa -3'
miRNA:   3'- gaUUUUUAUCGUG----CGCGGCa------AGCUCU- -5'
7025 5' -47 NC_001875.2 + 11210 0.68 0.998271
Target:  5'- --------cGC-CGCGCCGgaCGAGAa -3'
miRNA:   3'- gauuuuuauCGuGCGCGGCaaGCUCU- -5'
7025 5' -47 NC_001875.2 + 19708 0.68 0.998271
Target:  5'- --cGAGGU-GUACGCGCUGUgggcCGAGGc -3'
miRNA:   3'- gauUUUUAuCGUGCGCGGCAa---GCUCU- -5'
7025 5' -47 NC_001875.2 + 70380 0.68 0.997915
Target:  5'- -------cAGCaauuGCGCGCCGcugUCGAGGu -3'
miRNA:   3'- gauuuuuaUCG----UGCGCGGCa--AGCUCU- -5'
7025 5' -47 NC_001875.2 + 77406 0.68 0.997915
Target:  5'- gCUAAcGAccGcCACGCGCUGUUCGGcGAc -3'
miRNA:   3'- -GAUUuUUauC-GUGCGCGGCAAGCU-CU- -5'
7025 5' -47 NC_001875.2 + 90604 0.68 0.997499
Target:  5'- -----uGUAGCACGCGaCGgcCGAGGc -3'
miRNA:   3'- gauuuuUAUCGUGCGCgGCaaGCUCU- -5'
7025 5' -47 NC_001875.2 + 57304 0.68 0.997016
Target:  5'- --cGAAcgGGCGCGCGUCGU-CGGcGAc -3'
miRNA:   3'- gauUUUuaUCGUGCGCGGCAaGCU-CU- -5'
7025 5' -47 NC_001875.2 + 9628 0.68 0.997016
Target:  5'- gCUAAGcugcguGCGCGCGCCGUgcguguuucgCGAGc -3'
miRNA:   3'- -GAUUUuuau--CGUGCGCGGCAa---------GCUCu -5'
7025 5' -47 NC_001875.2 + 9734 0.68 0.996857
Target:  5'- -gAAGcGUGGCACGUguugagcguccaccGCCGUUcCGAGGc -3'
miRNA:   3'- gaUUUuUAUCGUGCG--------------CGGCAA-GCUCU- -5'
7025 5' -47 NC_001875.2 + 125274 0.69 0.996458
Target:  5'- -------aAGCugGCGCUGU-CGGGGu -3'
miRNA:   3'- gauuuuuaUCGugCGCGGCAaGCUCU- -5'
7025 5' -47 NC_001875.2 + 111202 0.69 0.996458
Target:  5'- -------cGGCGCGCGCCGUUUu--- -3'
miRNA:   3'- gauuuuuaUCGUGCGCGGCAAGcucu -5'
7025 5' -47 NC_001875.2 + 52445 0.69 0.995085
Target:  5'- -aGGAAAUGGUGUGCGCCGa-CGAGGa -3'
miRNA:   3'- gaUUUUUAUCGUGCGCGGCaaGCUCU- -5'
7025 5' -47 NC_001875.2 + 6454 0.7 0.993308
Target:  5'- ----uAGUAGCGCGCGgUGUUCGucAGGu -3'
miRNA:   3'- gauuuUUAUCGUGCGCgGCAAGC--UCU- -5'
7025 5' -47 NC_001875.2 + 53908 0.7 0.993308
Target:  5'- aUAAuuGUGG-GCGCGCCGUUgCGGGc -3'
miRNA:   3'- gAUUuuUAUCgUGCGCGGCAA-GCUCu -5'
7025 5' -47 NC_001875.2 + 55319 0.7 0.990664
Target:  5'- ----cAGUGGCgcgcgacggugaugACGCGCCGcUUCGGGGg -3'
miRNA:   3'- gauuuUUAUCG--------------UGCGCGGC-AAGCUCU- -5'
7025 5' -47 NC_001875.2 + 46045 0.7 0.989715
Target:  5'- --------cGCGCGCGCCGUUCuuauGGAc -3'
miRNA:   3'- gauuuuuauCGUGCGCGGCAAGc---UCU- -5'
7025 5' -47 NC_001875.2 + 34987 0.71 0.984765
Target:  5'- gCUAGAAGUGGCGCccaugacgcucGCcgaguucgaucgGCUGUUCGAGGu -3'
miRNA:   3'- -GAUUUUUAUCGUG-----------CG------------CGGCAAGCUCU- -5'
7025 5' -47 NC_001875.2 + 94441 0.71 0.984765
Target:  5'- ---------cCACGCGCCGUUCGAa- -3'
miRNA:   3'- gauuuuuaucGUGCGCGGCAAGCUcu -5'
7025 5' -47 NC_001875.2 + 83325 0.72 0.975579
Target:  5'- -------gGGCGCGCGCCGggCGGc- -3'
miRNA:   3'- gauuuuuaUCGUGCGCGGCaaGCUcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.