miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7026 3' -56.6 NC_001875.2 + 130333 1.08 0.002307
Target:  5'- cCGCACCCAAAAGGCAGGGUCGUCGCUg -3'
miRNA:   3'- -GCGUGGGUUUUCCGUCCCAGCAGCGA- -5'
7026 3' -56.6 NC_001875.2 + 130135 0.96 0.016294
Target:  5'- uCGCACCCGAAAaGCAGGGUCGUCGCUg -3'
miRNA:   3'- -GCGUGGGUUUUcCGUCCCAGCAGCGA- -5'
7026 3' -56.6 NC_001875.2 + 130201 0.96 0.016294
Target:  5'- uCGCACCCGAAAaGCAGGGUCGUCGCUg -3'
miRNA:   3'- -GCGUGGGUUUUcCGUCCCAGCAGCGA- -5'
7026 3' -56.6 NC_001875.2 + 130267 0.96 0.016294
Target:  5'- uCGCACCCGAAAaGCAGGGUCGUCGCUg -3'
miRNA:   3'- -GCGUGGGUUUUcCGUCCCAGCAGCGA- -5'
7026 3' -56.6 NC_001875.2 + 129943 0.89 0.050521
Target:  5'- gCGCACCCGAAAaGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGUUUUcCGUCCCAGCaGCGA- -5'
7026 3' -56.6 NC_001875.2 + 101621 0.89 0.05192
Target:  5'- uCGCACCCGAAAaGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGUUUUcCGUCCCAGCaGCGA- -5'
7026 3' -56.6 NC_001875.2 + 130075 0.89 0.05192
Target:  5'- uCGCACCCGAAAaGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGUUUUcCGUCCCAGCaGCGA- -5'
7026 3' -56.6 NC_001875.2 + 130399 0.89 0.05192
Target:  5'- uCGCACCCGAAAaGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGUUUUcCGUCCCAGCaGCGA- -5'
7026 3' -56.6 NC_001875.2 + 130495 0.89 0.05192
Target:  5'- uCGCACCCGAAAaGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGUUUUcCGUCCCAGCaGCGA- -5'
7026 3' -56.6 NC_001875.2 + 101555 0.89 0.05192
Target:  5'- uCGCACCCGAAAaGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGUUUUcCGUCCCAGCaGCGA- -5'
7026 3' -56.6 NC_001875.2 + 101489 0.89 0.05192
Target:  5'- uCGCACCCGAAAaGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGUUUUcCGUCCCAGCaGCGA- -5'
7026 3' -56.6 NC_001875.2 + 101423 0.89 0.05192
Target:  5'- uCGCACCCGAAAaGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGUUUUcCGUCCCAGCaGCGA- -5'
7026 3' -56.6 NC_001875.2 + 101357 0.89 0.05192
Target:  5'- uCGCACCCGAAAaGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGUUUUcCGUCCCAGCaGCGA- -5'
7026 3' -56.6 NC_001875.2 + 101291 0.89 0.05192
Target:  5'- uCGCACCCGAAAaGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGUUUUcCGUCCCAGCaGCGA- -5'
7026 3' -56.6 NC_001875.2 + 101225 0.89 0.05192
Target:  5'- uCGCACCCGAAAaGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGUUUUcCGUCCCAGCaGCGA- -5'
7026 3' -56.6 NC_001875.2 + 101159 0.89 0.05192
Target:  5'- uCGCACCCGAAAaGCAGGGUCGcCGCUg -3'
miRNA:   3'- -GCGUGGGUUUUcCGUCCCAGCaGCGA- -5'
7026 3' -56.6 NC_001875.2 + 17091 0.84 0.096598
Target:  5'- uCGCACCCGAAAaGCAcGGUCGUCGCUg -3'
miRNA:   3'- -GCGUGGGUUUUcCGUcCCAGCAGCGA- -5'
7026 3' -56.6 NC_001875.2 + 130011 0.83 0.113251
Target:  5'- -aCACCCGAAAaGCAGGGUCGUUGCUg -3'
miRNA:   3'- gcGUGGGUUUUcCGUCCCAGCAGCGA- -5'
7026 3' -56.6 NC_001875.2 + 130561 0.8 0.189856
Target:  5'- uCGCACCCGAAAaGCAGGGUCGcCGa- -3'
miRNA:   3'- -GCGUGGGUUUUcCGUCCCAGCaGCga -5'
7026 3' -56.6 NC_001875.2 + 17158 0.76 0.338053
Target:  5'- gGCACCCGAAAaGCAcGGUCGcCGCUg -3'
miRNA:   3'- gCGUGGGUUUUcCGUcCCAGCaGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.