Results 1 - 20 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7026 | 5' | -52.9 | NC_001875.2 | + | 85226 | 0.68 | 0.881792 |
Target: 5'- -cGGUAGCGC-CGCaugUCGAcGAGCGc -3' miRNA: 3'- uuUCAUCGUGcGCGgaaAGCU-CUCGC- -5' |
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7026 | 5' | -52.9 | NC_001875.2 | + | 130243 | 0.88 | 0.09877 |
Target: 5'- ---aUAGCACGCGCCgUUCGAGAGCGu -3' miRNA: 3'- uuucAUCGUGCGCGGaAAGCUCUCGC- -5' |
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7026 | 5' | -52.9 | NC_001875.2 | + | 130471 | 0.88 | 0.10436 |
Target: 5'- ---cUAGCACGCGCCgUUCGAGAGCGu -3' miRNA: 3'- uuucAUCGUGCGCGGaAAGCUCUCGC- -5' |
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7026 | 5' | -52.9 | NC_001875.2 | + | 130309 | 0.88 | 0.10436 |
Target: 5'- ---aUAGCACGCGCCgUUCGAGAGCGc -3' miRNA: 3'- uuucAUCGUGCGCGGaAAGCUCUCGC- -5' |
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7026 | 5' | -52.9 | NC_001875.2 | + | 130111 | 0.76 | 0.487185 |
Target: 5'- ---cUAGCACaCGCCgUUCGAGAGCGu -3' miRNA: 3'- uuucAUCGUGcGCGGaAAGCUCUCGC- -5' |
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7026 | 5' | -52.9 | NC_001875.2 | + | 55319 | 0.75 | 0.555756 |
Target: 5'- -cAGUGGCgcgcgacggugaugACGCGCCgcUUCGGGGGCGc -3' miRNA: 3'- uuUCAUCG--------------UGCGCGGa-AAGCUCUCGC- -5' |
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7026 | 5' | -52.9 | NC_001875.2 | + | 129985 | 0.73 | 0.643951 |
Target: 5'- ---aUAGCACGCGCCUUUCaaaAGCGu -3' miRNA: 3'- uuucAUCGUGCGCGGAAAGcucUCGC- -5' |
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7026 | 5' | -52.9 | NC_001875.2 | + | 26772 | 0.72 | 0.72827 |
Target: 5'- --cGUAGCacucguugagcgACGCGCCg-UCGAGGGUGg -3' miRNA: 3'- uuuCAUCG------------UGCGCGGaaAGCUCUCGC- -5' |
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7026 | 5' | -52.9 | NC_001875.2 | + | 31980 | 0.69 | 0.833652 |
Target: 5'- --uGUGGCGCGCguacgGCCggUUUGuGAGCGg -3' miRNA: 3'- uuuCAUCGUGCG-----CGGa-AAGCuCUCGC- -5' |
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7026 | 5' | -52.9 | NC_001875.2 | + | 130177 | 0.88 | 0.09877 |
Target: 5'- ---aUAGCACGCGCCgUUCGAGAGCGu -3' miRNA: 3'- uuucAUCGUGCGCGGaAAGCUCUCGC- -5' |
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7026 | 5' | -52.9 | NC_001875.2 | + | 130051 | 0.88 | 0.09877 |
Target: 5'- ---aUAGCACGCGCCgUUCGAGAGCGu -3' miRNA: 3'- uuucAUCGUGCGCGGaAAGCUCUCGC- -5' |
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7026 | 5' | -52.9 | NC_001875.2 | + | 101465 | 0.91 | 0.066894 |
Target: 5'- ---aUAGCACGCGCUUUUCGAGAGCGu -3' miRNA: 3'- uuucAUCGUGCGCGGAAAGCUCUCGC- -5' |
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7026 | 5' | -52.9 | NC_001875.2 | + | 101135 | 0.96 | 0.0311 |
Target: 5'- ---aUAGCACGCGCCUUUCGAGAGCGu -3' miRNA: 3'- uuucAUCGUGCGCGGAAAGCUCUCGC- -5' |
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7026 | 5' | -52.9 | NC_001875.2 | + | 101267 | 0.96 | 0.0311 |
Target: 5'- ---aUAGCACGCGCCUUUCGAGAGCGu -3' miRNA: 3'- uuucAUCGUGCGCGGAAAGCUCUCGC- -5' |
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7026 | 5' | -52.9 | NC_001875.2 | + | 101531 | 0.96 | 0.0311 |
Target: 5'- ---aUAGCACGCGCCUUUCGAGAGCGu -3' miRNA: 3'- uuucAUCGUGCGCGGAAAGCUCUCGC- -5' |
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7026 | 5' | -52.9 | NC_001875.2 | + | 101597 | 0.96 | 0.0311 |
Target: 5'- ---aUAGCACGCGCCUUUCGAGAGCGu -3' miRNA: 3'- uuucAUCGUGCGCGGAAAGCUCUCGC- -5' |
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7026 | 5' | -52.9 | NC_001875.2 | + | 130537 | 0.96 | 0.0311 |
Target: 5'- ---aUAGCACGCGCCUUUCGAGAGCGu -3' miRNA: 3'- uuucAUCGUGCGCGGAAAGCUCUCGC- -5' |
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7026 | 5' | -52.9 | NC_001875.2 | + | 101201 | 0.91 | 0.066894 |
Target: 5'- ---aUAGCACGCGCUUUUCGAGAGCGu -3' miRNA: 3'- uuucAUCGUGCGCGGAAAGCUCUCGC- -5' |
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7026 | 5' | -52.9 | NC_001875.2 | + | 101333 | 0.91 | 0.066894 |
Target: 5'- ---aUAGCACGCGCUUUUCGAGAGCGu -3' miRNA: 3'- uuucAUCGUGCGCGGAAAGCUCUCGC- -5' |
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7026 | 5' | -52.9 | NC_001875.2 | + | 101399 | 0.91 | 0.066894 |
Target: 5'- ---aUAGCACGCGCUUUUCGAGAGCGu -3' miRNA: 3'- uuucAUCGUGCGCGGAAAGCUCUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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