miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7026 5' -52.9 NC_001875.2 + 120058 0.7 0.787989
Target:  5'- uGGGUGGUcagGCGCGCCg--CGAGguuGGCGa -3'
miRNA:   3'- uUUCAUCG---UGCGCGGaaaGCUC---UCGC- -5'
7026 5' -52.9 NC_001875.2 + 81161 0.71 0.748651
Target:  5'- ----aAGCAgGCGCCUUUCGGGccgacggccAGCGc -3'
miRNA:   3'- uuucaUCGUgCGCGGAAAGCUC---------UCGC- -5'
7026 5' -52.9 NC_001875.2 + 26772 0.72 0.72827
Target:  5'- --cGUAGCacucguugagcgACGCGCCg-UCGAGGGUGg -3'
miRNA:   3'- uuuCAUCG------------UGCGCGGaaAGCUCUCGC- -5'
7026 5' -52.9 NC_001875.2 + 83794 0.73 0.665287
Target:  5'- --uGUAGCGCGCGCCc-UCGugccuguGGGCGg -3'
miRNA:   3'- uuuCAUCGUGCGCGGaaAGCu------CUCGC- -5'
7026 5' -52.9 NC_001875.2 + 129985 0.73 0.643951
Target:  5'- ---aUAGCACGCGCCUUUCaaaAGCGu -3'
miRNA:   3'- uuucAUCGUGCGCGGAAAGcucUCGC- -5'
7026 5' -52.9 NC_001875.2 + 28926 0.74 0.579983
Target:  5'- --cGUGGC-CGCGUaUUUCGAGAGUGg -3'
miRNA:   3'- uuuCAUCGuGCGCGgAAAGCUCUCGC- -5'
7026 5' -52.9 NC_001875.2 + 55319 0.75 0.555756
Target:  5'- -cAGUGGCgcgcgacggugaugACGCGCCgcUUCGGGGGCGc -3'
miRNA:   3'- uuUCAUCG--------------UGCGCGGa-AAGCUCUCGC- -5'
7026 5' -52.9 NC_001875.2 + 130111 0.76 0.487185
Target:  5'- ---cUAGCACaCGCCgUUCGAGAGCGu -3'
miRNA:   3'- uuucAUCGUGcGCGGaAAGCUCUCGC- -5'
7026 5' -52.9 NC_001875.2 + 17133 0.76 0.46748
Target:  5'- ---aUAGCACaCGCCgUUCGAGAGCGu -3'
miRNA:   3'- uuucAUCGUGcGCGGaAAGCUCUCGC- -5'
7026 5' -52.9 NC_001875.2 + 17068 0.82 0.220153
Target:  5'- ---aUAGCACGCG-CUUUCGAGAGCGu -3'
miRNA:   3'- uuucAUCGUGCGCgGAAAGCUCUCGC- -5'
7026 5' -52.9 NC_001875.2 + 130309 0.88 0.10436
Target:  5'- ---aUAGCACGCGCCgUUCGAGAGCGc -3'
miRNA:   3'- uuucAUCGUGCGCGGaAAGCUCUCGC- -5'
7026 5' -52.9 NC_001875.2 + 130471 0.88 0.10436
Target:  5'- ---cUAGCACGCGCCgUUCGAGAGCGu -3'
miRNA:   3'- uuucAUCGUGCGCGGaAAGCUCUCGC- -5'
7026 5' -52.9 NC_001875.2 + 130243 0.88 0.09877
Target:  5'- ---aUAGCACGCGCCgUUCGAGAGCGu -3'
miRNA:   3'- uuucAUCGUGCGCGGaAAGCUCUCGC- -5'
7026 5' -52.9 NC_001875.2 + 130051 0.88 0.09877
Target:  5'- ---aUAGCACGCGCCgUUCGAGAGCGu -3'
miRNA:   3'- uuucAUCGUGCGCGGaAAGCUCUCGC- -5'
7026 5' -52.9 NC_001875.2 + 130177 0.88 0.09877
Target:  5'- ---aUAGCACGCGCCgUUCGAGAGCGu -3'
miRNA:   3'- uuucAUCGUGCGCGGaAAGCUCUCGC- -5'
7026 5' -52.9 NC_001875.2 + 101465 0.91 0.066894
Target:  5'- ---aUAGCACGCGCUUUUCGAGAGCGu -3'
miRNA:   3'- uuucAUCGUGCGCGGAAAGCUCUCGC- -5'
7026 5' -52.9 NC_001875.2 + 101399 0.91 0.066894
Target:  5'- ---aUAGCACGCGCUUUUCGAGAGCGu -3'
miRNA:   3'- uuucAUCGUGCGCGGAAAGCUCUCGC- -5'
7026 5' -52.9 NC_001875.2 + 101333 0.91 0.066894
Target:  5'- ---aUAGCACGCGCUUUUCGAGAGCGu -3'
miRNA:   3'- uuucAUCGUGCGCGGAAAGCUCUCGC- -5'
7026 5' -52.9 NC_001875.2 + 101201 0.91 0.066894
Target:  5'- ---aUAGCACGCGCUUUUCGAGAGCGu -3'
miRNA:   3'- uuucAUCGUGCGCGGAAAGCUCUCGC- -5'
7026 5' -52.9 NC_001875.2 + 130537 0.96 0.0311
Target:  5'- ---aUAGCACGCGCCUUUCGAGAGCGu -3'
miRNA:   3'- uuucAUCGUGCGCGGAAAGCUCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.