miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7027 5' -50.6 NC_001875.2 + 9639 0.67 0.967693
Target:  5'- -----uGCGCGCGCCgugcgugUUUCGcGAGCu -3'
miRNA:   3'- uuuuauCGUGCGCGG-------AAAGCuCUCGc -5'
7027 5' -50.6 NC_001875.2 + 50976 0.68 0.964646
Target:  5'- ---uUGGCGCGCGCCgagUCGcucAGCu -3'
miRNA:   3'- uuuuAUCGUGCGCGGaa-AGCuc-UCGc -5'
7027 5' -50.6 NC_001875.2 + 94478 0.68 0.964646
Target:  5'- ----cGGCGCGCGCg-UUCGcacGAGCGc -3'
miRNA:   3'- uuuuaUCGUGCGCGgaAAGCu--CUCGC- -5'
7027 5' -50.6 NC_001875.2 + 50556 0.68 0.964646
Target:  5'- -----cGCGCGUGUCUUUUGcGGGGCa -3'
miRNA:   3'- uuuuauCGUGCGCGGAAAGC-UCUCGc -5'
7027 5' -50.6 NC_001875.2 + 129097 0.68 0.961032
Target:  5'- -----cGCugGCGCCUUUCaauGAcAGCGa -3'
miRNA:   3'- uuuuauCGugCGCGGAAAG---CUcUCGC- -5'
7027 5' -50.6 NC_001875.2 + 5996 0.68 0.948679
Target:  5'- ----cAGCGCGUGCCgaaUGGGGGCc -3'
miRNA:   3'- uuuuaUCGUGCGCGGaaaGCUCUCGc -5'
7027 5' -50.6 NC_001875.2 + 93393 0.69 0.939141
Target:  5'- ---cUAGCGCGCGCCggcacuugcugcUUUCGuAG-GCGg -3'
miRNA:   3'- uuuuAUCGUGCGCGG------------AAAGC-UCuCGC- -5'
7027 5' -50.6 NC_001875.2 + 120058 0.69 0.939141
Target:  5'- uGGGUGGUcagGCGCGCCg--CGAGguuGGCGa -3'
miRNA:   3'- uUUUAUCG---UGCGCGGaaaGCUC---UCGC- -5'
7027 5' -50.6 NC_001875.2 + 31980 0.69 0.928534
Target:  5'- --uGUGGCGCGCguacgGCCggUUUGuGAGCGg -3'
miRNA:   3'- uuuUAUCGUGCG-----CGGa-AAGCuCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 114937 0.69 0.922825
Target:  5'- ----aGGCcCGCGCCgucgUCGAuGGGCGu -3'
miRNA:   3'- uuuuaUCGuGCGCGGaa--AGCU-CUCGC- -5'
7027 5' -50.6 NC_001875.2 + 86927 0.69 0.922825
Target:  5'- ----aAGCGC-CGCCUagagugCGAGGGCGa -3'
miRNA:   3'- uuuuaUCGUGcGCGGAaa----GCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 74120 0.71 0.859613
Target:  5'- ---cUGGCGCGUguucGCCUagagcuggagUUCGAGGGCGc -3'
miRNA:   3'- uuuuAUCGUGCG----CGGA----------AAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 83794 0.73 0.797377
Target:  5'- --uGUAGCGCGCGCCc-UCGugccuguGGGCGg -3'
miRNA:   3'- uuuUAUCGUGCGCGGaaAGCu------CUCGC- -5'
7027 5' -50.6 NC_001875.2 + 79311 0.73 0.787734
Target:  5'- ---cUGGCGCGUG-CUUUCGAuGAGCGc -3'
miRNA:   3'- uuuuAUCGUGCGCgGAAAGCU-CUCGC- -5'
7027 5' -50.6 NC_001875.2 + 55319 0.73 0.754848
Target:  5'- -cAGUGGCgcgcgacggugaugACGCGCCgcUUCGGGGGCGc -3'
miRNA:   3'- uuUUAUCG--------------UGCGCGGa-AAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 26785 0.74 0.737363
Target:  5'- ----gAGCgACGCGCCg-UCGAGGGUGg -3'
miRNA:   3'- uuuuaUCG-UGCGCGGaaAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 28926 0.74 0.737363
Target:  5'- --cGUGGC-CGCGUaUUUCGAGAGUGg -3'
miRNA:   3'- uuuUAUCGuGCGCGgAAAGCUCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 81161 0.74 0.705812
Target:  5'- ----aAGCAgGCGCCUUUCGGGccgacggccAGCGc -3'
miRNA:   3'- uuuuaUCGUgCGCGGAAAGCUC---------UCGC- -5'
7027 5' -50.6 NC_001875.2 + 17195 0.76 0.608494
Target:  5'- aAAAAUAGCACaCGCCgUUCGcGAGCGc -3'
miRNA:   3'- -UUUUAUCGUGcGCGGaAAGCuCUCGC- -5'
7027 5' -50.6 NC_001875.2 + 130111 0.8 0.432989
Target:  5'- ---cUAGCACaCGCCgUUCGAGAGCGu -3'
miRNA:   3'- uuuuAUCGUGcGCGGaAAGCUCUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.