miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7028 5' -55.3 NC_001875.2 + 45958 0.66 0.919394
Target:  5'- uGUGGCCAAC---CAGGUgCGGCGGUa -3'
miRNA:   3'- gCGCCGGUUGcacGUCUA-GCUGUCAg -5'
7028 5' -55.3 NC_001875.2 + 1291 0.66 0.919394
Target:  5'- uGCGcGUCGACGUGguGAaCGAUgcggaGGUUa -3'
miRNA:   3'- gCGC-CGGUUGCACguCUaGCUG-----UCAG- -5'
7028 5' -55.3 NC_001875.2 + 130109 0.66 0.919394
Target:  5'- gGCGG-CGGCG-GCGGcgCGACcgguGUCg -3'
miRNA:   3'- gCGCCgGUUGCaCGUCuaGCUGu---CAG- -5'
7028 5' -55.3 NC_001875.2 + 111804 0.66 0.919394
Target:  5'- aCGCGGCCGACG-GCGccuggcugcuccGcgUGACGGc- -3'
miRNA:   3'- -GCGCCGGUUGCaCGU------------CuaGCUGUCag -5'
7028 5' -55.3 NC_001875.2 + 92536 0.66 0.913545
Target:  5'- cCGcCGGCaCggUGUGCAGcgcgcacuugguGUCGGCGGg- -3'
miRNA:   3'- -GC-GCCG-GuuGCACGUC------------UAGCUGUCag -5'
7028 5' -55.3 NC_001875.2 + 39163 0.66 0.907453
Target:  5'- uGgGGCC-GCGagGCGGGcCGGCGGUUg -3'
miRNA:   3'- gCgCCGGuUGCa-CGUCUaGCUGUCAG- -5'
7028 5' -55.3 NC_001875.2 + 119477 0.66 0.907453
Target:  5'- gCGuCGGCCAACGacaUGCuGcgCGA-AGUCg -3'
miRNA:   3'- -GC-GCCGGUUGC---ACGuCuaGCUgUCAG- -5'
7028 5' -55.3 NC_001875.2 + 124735 0.66 0.907453
Target:  5'- gGCGGUCAAUGUcgGCAGcgCGcgcuGCAuGUCu -3'
miRNA:   3'- gCGCCGGUUGCA--CGUCuaGC----UGU-CAG- -5'
7028 5' -55.3 NC_001875.2 + 59890 0.66 0.907453
Target:  5'- uCGCGGCgAcaggcuGCGcGCGGAgCGcGCGGUCa -3'
miRNA:   3'- -GCGCCGgU------UGCaCGUCUaGC-UGUCAG- -5'
7028 5' -55.3 NC_001875.2 + 64466 0.66 0.907453
Target:  5'- -uUGGCCGACGaGCcGGUgGACgAGUCg -3'
miRNA:   3'- gcGCCGGUUGCaCGuCUAgCUG-UCAG- -5'
7028 5' -55.3 NC_001875.2 + 63263 0.66 0.901119
Target:  5'- gGCGGCCAGCGgcgccacGCGGugcgCGACcGcCg -3'
miRNA:   3'- gCGCCGGUUGCa------CGUCua--GCUGuCaG- -5'
7028 5' -55.3 NC_001875.2 + 67162 0.66 0.901119
Target:  5'- gCGCGGgaCAGCGUGguGGacacCG-CGGUCg -3'
miRNA:   3'- -GCGCCg-GUUGCACguCUa---GCuGUCAG- -5'
7028 5' -55.3 NC_001875.2 + 37428 0.66 0.901119
Target:  5'- --aGGCCGugGcGCAG-UCGGCGGcCa -3'
miRNA:   3'- gcgCCGGUugCaCGUCuAGCUGUCaG- -5'
7028 5' -55.3 NC_001875.2 + 33960 0.66 0.894546
Target:  5'- gGCGucuaCAACGUGCAcGGUgGACAaGUCg -3'
miRNA:   3'- gCGCcg--GUUGCACGU-CUAgCUGU-CAG- -5'
7028 5' -55.3 NC_001875.2 + 2304 0.66 0.894546
Target:  5'- cCGUGGCC-GCGcGCAGcUCGGcCAGcUCg -3'
miRNA:   3'- -GCGCCGGuUGCaCGUCuAGCU-GUC-AG- -5'
7028 5' -55.3 NC_001875.2 + 54124 0.66 0.894546
Target:  5'- gCGCGuguacaCUAGCGUGCaagcGGAcggCGGCAGUCg -3'
miRNA:   3'- -GCGCc-----GGUUGCACG----UCUa--GCUGUCAG- -5'
7028 5' -55.3 NC_001875.2 + 42325 0.66 0.894546
Target:  5'- gCGCGcCCAGCGgccccagGCGGAagCG-CAGUCg -3'
miRNA:   3'- -GCGCcGGUUGCa------CGUCUa-GCuGUCAG- -5'
7028 5' -55.3 NC_001875.2 + 122806 0.66 0.890488
Target:  5'- gCGCGGCCGGCGgcuccaaacgcaagGCguccgAGGUgGACAG-Cg -3'
miRNA:   3'- -GCGCCGGUUGCa-------------CG-----UCUAgCUGUCaG- -5'
7028 5' -55.3 NC_001875.2 + 1706 0.66 0.887737
Target:  5'- uGUGGCCAcaaAUGcUGCGGGcgCGACaccGGUCg -3'
miRNA:   3'- gCGCCGGU---UGC-ACGUCUa-GCUG---UCAG- -5'
7028 5' -55.3 NC_001875.2 + 22821 0.66 0.887737
Target:  5'- uGCGGuCCGACG-GCAccGUCGGCGG-Ca -3'
miRNA:   3'- gCGCC-GGUUGCaCGUc-UAGCUGUCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.