miRNA display CGI


Results 21 - 40 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7029 3' -45.8 NC_001875.2 + 43313 0.66 0.999925
Target:  5'- aGCGGCGcgcGCGCGGGUCgGCGUGGu- -3'
miRNA:   3'- -CGCCGUuu-UGUGUUUAGaCGUGCUug -5'
7029 3' -45.8 NC_001875.2 + 59743 0.66 0.999925
Target:  5'- aGUGGUucAGCAC---UUUGCGCGAAa -3'
miRNA:   3'- -CGCCGuuUUGUGuuuAGACGUGCUUg -5'
7029 3' -45.8 NC_001875.2 + 122959 0.66 0.999925
Target:  5'- aGCGGCAAuauucCACcgAGAUUUGCACcguGGCg -3'
miRNA:   3'- -CGCCGUUuu---GUG--UUUAGACGUGc--UUG- -5'
7029 3' -45.8 NC_001875.2 + 29813 0.66 0.999925
Target:  5'- gGCGGC---GCAUggGUCaacgGCACGcuGCa -3'
miRNA:   3'- -CGCCGuuuUGUGuuUAGa---CGUGCu-UG- -5'
7029 3' -45.8 NC_001875.2 + 45213 0.66 0.999925
Target:  5'- cGCuGGCGu-ACAC--GUCgcGCGCGAACa -3'
miRNA:   3'- -CG-CCGUuuUGUGuuUAGa-CGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 122135 0.66 0.999925
Target:  5'- cGCGGCGcgGC-CGGcgC-GCACGAcgGCg -3'
miRNA:   3'- -CGCCGUuuUGuGUUuaGaCGUGCU--UG- -5'
7029 3' -45.8 NC_001875.2 + 102428 0.66 0.999925
Target:  5'- cGCGGCG----ACGAGgugcgCUGCGCGuuuuGCa -3'
miRNA:   3'- -CGCCGUuuugUGUUUa----GACGUGCu---UG- -5'
7029 3' -45.8 NC_001875.2 + 118789 0.66 0.999923
Target:  5'- gGUGGCGcgacccaAAGCGCuuAUUUGCGCGc-- -3'
miRNA:   3'- -CGCCGU-------UUUGUGuuUAGACGUGCuug -5'
7029 3' -45.8 NC_001875.2 + 66680 0.66 0.999901
Target:  5'- gGCaGCGGGAUGgGAAUgCUGCACGuGACc -3'
miRNA:   3'- -CGcCGUUUUGUgUUUA-GACGUGC-UUG- -5'
7029 3' -45.8 NC_001875.2 + 126834 0.66 0.999901
Target:  5'- gGCGGCGcaaaguGCACAAGUgCcGCAC-AGCa -3'
miRNA:   3'- -CGCCGUuu----UGUGUUUA-GaCGUGcUUG- -5'
7029 3' -45.8 NC_001875.2 + 103951 0.66 0.999901
Target:  5'- gGCGGCcuguuGCACAcggcauucgAGUCUGcCAUGGAa -3'
miRNA:   3'- -CGCCGuuu--UGUGU---------UUAGAC-GUGCUUg -5'
7029 3' -45.8 NC_001875.2 + 82312 0.66 0.999901
Target:  5'- cGCGGC---GCGCAAuUCUacUACGAGCu -3'
miRNA:   3'- -CGCCGuuuUGUGUUuAGAc-GUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 83858 0.66 0.999901
Target:  5'- gGCGGCucGACGCcccgCUcGCACGGu- -3'
miRNA:   3'- -CGCCGuuUUGUGuuuaGA-CGUGCUug -5'
7029 3' -45.8 NC_001875.2 + 9010 0.67 0.999869
Target:  5'- cGCGGCGcaccAAAUcCGAGUgUGCACGu-- -3'
miRNA:   3'- -CGCCGU----UUUGuGUUUAgACGUGCuug -5'
7029 3' -45.8 NC_001875.2 + 128717 0.67 0.999869
Target:  5'- aGCgGGCuucgccGCcCAGGUCUGCgcGCGAGCc -3'
miRNA:   3'- -CG-CCGuuu---UGuGUUUAGACG--UGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 89020 0.67 0.999858
Target:  5'- cGCGuGC-GAGCGCAAguuGUCauucagcgugcccgUGCGCGGGCu -3'
miRNA:   3'- -CGC-CGuUUUGUGUU---UAG--------------ACGUGCUUG- -5'
7029 3' -45.8 NC_001875.2 + 121840 0.67 0.999829
Target:  5'- uGUGGCAGuuuuuCACAAGcgCgUGCACGuACg -3'
miRNA:   3'- -CGCCGUUuu---GUGUUUa-G-ACGUGCuUG- -5'
7029 3' -45.8 NC_001875.2 + 69363 0.67 0.999829
Target:  5'- aGCGGCGu-GCGCccg-CUGCGCGc-- -3'
miRNA:   3'- -CGCCGUuuUGUGuuuaGACGUGCuug -5'
7029 3' -45.8 NC_001875.2 + 55151 0.67 0.999829
Target:  5'- gGCGGCAccGGACACAAAUacagccGCACc--- -3'
miRNA:   3'- -CGCCGU--UUUGUGUUUAga----CGUGcuug -5'
7029 3' -45.8 NC_001875.2 + 96046 0.67 0.999829
Target:  5'- cGCGGCAAGcgcguGCGCAccg--GCACGcACu -3'
miRNA:   3'- -CGCCGUUU-----UGUGUuuagaCGUGCuUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.