Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 7029 | 5' | -53.1 | NC_001875.2 | + | 109008 | 0.66 | 0.975805 |
|
Target: 5'- gCGUACGUcGUGCcgCCgACgGUgccGUCGGAc -3' miRNA: 3'- aGCAUGCA-CAUGa-GG-UGgCA---CAGCCU- -5' |
|||||||
| 7029 | 5' | -53.1 | NC_001875.2 | + | 127208 | 0.67 | 0.960868 |
|
Target: 5'- uUCGUGgGUGUGCUgacgcuuucgccguaCACCGUGUUuGAg -3' miRNA: 3'- -AGCAUgCACAUGAg--------------GUGGCACAGcCU- -5' |
|||||||
| 7029 | 5' | -53.1 | NC_001875.2 | + | 90806 | 0.67 | 0.956792 |
|
Target: 5'- gUCGUugGUGUuC-CCGaCGUGUCGcGAc -3' miRNA: 3'- -AGCAugCACAuGaGGUgGCACAGC-CU- -5' |
|||||||
| 7029 | 5' | -53.1 | NC_001875.2 | + | 23467 | 0.67 | 0.948659 |
|
Target: 5'- --uUGCGUGUACaaguuugcgUUgACCGUGUUGGGc -3' miRNA: 3'- agcAUGCACAUG---------AGgUGGCACAGCCU- -5' |
|||||||
| 7029 | 5' | -53.1 | NC_001875.2 | + | 62575 | 0.68 | 0.934661 |
|
Target: 5'- gUGUGCGUGUGCauuaaCCGgcCCGUgccGUCGGGc -3' miRNA: 3'- aGCAUGCACAUGa----GGU--GGCA---CAGCCU- -5' |
|||||||
| 7029 | 5' | -53.1 | NC_001875.2 | + | 45970 | 0.68 | 0.929506 |
|
Target: 5'- -gGUGCGgcgGUACcCCAgCGUGaCGGAc -3' miRNA: 3'- agCAUGCa--CAUGaGGUgGCACaGCCU- -5' |
|||||||
| 7029 | 5' | -53.1 | NC_001875.2 | + | 3004 | 0.69 | 0.893433 |
|
Target: 5'- gUUG-ACGaUGaGCUUCAUCGUGUCGGGc -3' miRNA: 3'- -AGCaUGC-ACaUGAGGUGGCACAGCCU- -5' |
|||||||
| 7029 | 5' | -53.1 | NC_001875.2 | + | 16186 | 0.72 | 0.778656 |
|
Target: 5'- aCGUgaauuAUGUGcACUCCACCGUG-CGGc -3' miRNA: 3'- aGCA-----UGCACaUGAGGUGGCACaGCCu -5' |
|||||||
| 7029 | 5' | -53.1 | NC_001875.2 | + | 23797 | 0.73 | 0.689538 |
|
Target: 5'- gUCGccgACGUGUcGCUCCGCgGcGUCGGGc -3' miRNA: 3'- -AGCa--UGCACA-UGAGGUGgCaCAGCCU- -5' |
|||||||
| 7029 | 5' | -53.1 | NC_001875.2 | + | 131620 | 1.09 | 0.005165 |
|
Target: 5'- uUCGUACGUGUACUCCACCGUGUCGGAc -3' miRNA: 3'- -AGCAUGCACAUGAGGUGGCACAGCCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home