miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7036 3' -62.9 NC_001876.1 + 15769 0.66 0.245784
Target:  5'- cAUCugCACUUCgGCCacggagcCGGCCCCG-Cg -3'
miRNA:   3'- -UGGugGUGGAGgCGGa------GUCGGGGCaG- -5'
7036 3' -62.9 NC_001876.1 + 22652 0.66 0.233454
Target:  5'- aGCCcuaGgCGCggCCGCUUCGGCCCCcUCa -3'
miRNA:   3'- -UGG---UgGUGgaGGCGGAGUCGGGGcAG- -5'
7036 3' -62.9 NC_001876.1 + 11140 0.66 0.233454
Target:  5'- aGCCAUgGCCgaagcgCCccgaaGCCUgGGCCCCGcCc -3'
miRNA:   3'- -UGGUGgUGGa-----GG-----CGGAgUCGGGGCaG- -5'
7036 3' -62.9 NC_001876.1 + 16202 0.66 0.223968
Target:  5'- cGCCGCCGuacccgcagggcgacUCcCCGCCUCAGCgCUGcCg -3'
miRNA:   3'- -UGGUGGU---------------GGaGGCGGAGUCGgGGCaG- -5'
7036 3' -62.9 NC_001876.1 + 8437 0.66 0.221648
Target:  5'- -gCGCCAUCUUCGUCUCGGgCUCG-Ca -3'
miRNA:   3'- ugGUGGUGGAGGCGGAGUCgGGGCaG- -5'
7036 3' -62.9 NC_001876.1 + 26883 0.67 0.194346
Target:  5'- aGCCGCuCAcCCUCCGCgUCucCCCCG-Cg -3'
miRNA:   3'- -UGGUG-GU-GGAGGCGgAGucGGGGCaG- -5'
7036 3' -62.9 NC_001876.1 + 22397 0.67 0.189251
Target:  5'- gGCCGCCGCUcCCGCCcugccggCGGCCagCCGg- -3'
miRNA:   3'- -UGGUGGUGGaGGCGGa------GUCGG--GGCag -5'
7036 3' -62.9 NC_001876.1 + 12498 0.68 0.170032
Target:  5'- aGCCGCCGCgUgCCGCCcaCAGCUCCu-- -3'
miRNA:   3'- -UGGUGGUGgA-GGCGGa-GUCGGGGcag -5'
7036 3' -62.9 NC_001876.1 + 14682 0.72 0.078133
Target:  5'- cACCACCGCCUCgauUGUgUCGGCCaCCGg- -3'
miRNA:   3'- -UGGUGGUGGAG---GCGgAGUCGG-GGCag -5'
7036 3' -62.9 NC_001876.1 + 12491 0.73 0.071737
Target:  5'- cACCACCGCCgCCGCC-CGGUgCCG-Cg -3'
miRNA:   3'- -UGGUGGUGGaGGCGGaGUCGgGGCaG- -5'
7036 3' -62.9 NC_001876.1 + 34274 0.77 0.031055
Target:  5'- cGCCGCCGCCUCCGCgacgcgCUCcGCCCCa-- -3'
miRNA:   3'- -UGGUGGUGGAGGCG------GAGuCGGGGcag -5'
7036 3' -62.9 NC_001876.1 + 173 0.77 0.031055
Target:  5'- cGCCGCCGCCUCCGCgacgcgCUCcGCCCCa-- -3'
miRNA:   3'- -UGGUGGUGGAGGCG------GAGuCGGGGcag -5'
7036 3' -62.9 NC_001876.1 + 204 0.79 0.02319
Target:  5'- cGCCGCCcCCgCCGcCCUCAGCCCCGcCc -3'
miRNA:   3'- -UGGUGGuGGaGGC-GGAGUCGGGGCaG- -5'
7036 3' -62.9 NC_001876.1 + 34243 0.79 0.02319
Target:  5'- cGCCGCCcCCgCCGcCCUCAGCCCCGcCc -3'
miRNA:   3'- -UGGUGGuGGaGGC-GGAGUCGGGGCaG- -5'
7036 3' -62.9 NC_001876.1 + 8561 1.08 0.00011
Target:  5'- cACCACCACCUCCGCCUCAGCCCCGUCu -3'
miRNA:   3'- -UGGUGGUGGAGGCGGAGUCGGGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.