miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7037 5' -59.6 NC_001876.1 + 7704 0.66 0.330504
Target:  5'- aAGGGaaGGCGCGGCcugucagcGCGGGC-CGGGa -3'
miRNA:   3'- aUCCCggCUGCGCCG--------CGUCUGuGUUU- -5'
7037 5' -59.6 NC_001876.1 + 18008 0.66 0.32233
Target:  5'- -cGGGCaCGAaGCGGagcuGCAGACGCu-- -3'
miRNA:   3'- auCCCG-GCUgCGCCg---CGUCUGUGuuu -5'
7037 5' -59.6 NC_001876.1 + 14621 0.66 0.306438
Target:  5'- cGGuGGCCGACacaaucgagGCGGUGguGGCugAc- -3'
miRNA:   3'- aUC-CCGGCUG---------CGCCGCguCUGugUuu -5'
7037 5' -59.6 NC_001876.1 + 21802 0.66 0.306438
Target:  5'- --cGGCCGGCaaaGCGGCGUcaaAGugACAGc -3'
miRNA:   3'- aucCCGGCUG---CGCCGCG---UCugUGUUu -5'
7037 5' -59.6 NC_001876.1 + 16092 0.66 0.298719
Target:  5'- cGGGGCUuGCGCGGCacgaccacugccGCGGGCAaAGAg -3'
miRNA:   3'- aUCCCGGcUGCGCCG------------CGUCUGUgUUU- -5'
7037 5' -59.6 NC_001876.1 + 8504 0.66 0.298719
Target:  5'- cGGGGCUgaggcggagGugGUGGUGCAGAUAa--- -3'
miRNA:   3'- aUCCCGG---------CugCGCCGCGUCUGUguuu -5'
7037 5' -59.6 NC_001876.1 + 9372 0.66 0.291152
Target:  5'- -cGGGCaCGuuGCGGCGCugcGGGgGCAGGg -3'
miRNA:   3'- auCCCG-GCugCGCCGCG---UCUgUGUUU- -5'
7037 5' -59.6 NC_001876.1 + 108 0.68 0.235973
Target:  5'- gUGGGGCgGAgCGCGuCGCGGAgGCGGc -3'
miRNA:   3'- -AUCCCGgCU-GCGCcGCGUCUgUGUUu -5'
7037 5' -59.6 NC_001876.1 + 34339 0.68 0.235973
Target:  5'- gUGGGGCgGAgCGCGuCGCGGAgGCGGc -3'
miRNA:   3'- -AUCCCGgCU-GCGCcGCGUCUgUGUUu -5'
7037 5' -59.6 NC_001876.1 + 16503 0.7 0.174685
Target:  5'- cAGuGGCCGGCGcCGGCGCcgaacAGGCuuGCGAGg -3'
miRNA:   3'- aUC-CCGGCUGC-GCCGCG-----UCUG--UGUUU- -5'
7037 5' -59.6 NC_001876.1 + 34286 0.71 0.127986
Target:  5'- gGGGGCgGcGCGCGGgGCGGcGCGCGGGg -3'
miRNA:   3'- aUCCCGgC-UGCGCCgCGUC-UGUGUUU- -5'
7037 5' -59.6 NC_001876.1 + 161 0.71 0.127986
Target:  5'- gGGGGCgGcGCGCGGgGCGGcGCGCGGGg -3'
miRNA:   3'- aUCCCGgC-UGCGCCgCGUC-UGUGUUU- -5'
7037 5' -59.6 NC_001876.1 + 15706 0.72 0.107655
Target:  5'- cGGGGCCGGCuccGUGGCcgaaguGCAGAUGCGAGa -3'
miRNA:   3'- aUCCCGGCUG---CGCCG------CGUCUGUGUUU- -5'
7037 5' -59.6 NC_001876.1 + 14783 0.76 0.06343
Target:  5'- -uGGGCCGgcGCGCGGCcgcuaucgcaGCAGACGCGGc -3'
miRNA:   3'- auCCCGGC--UGCGCCG----------CGUCUGUGUUu -5'
7037 5' -59.6 NC_001876.1 + 15347 1.04 0.000365
Target:  5'- gUAGGGCCGACGCGGCGCAGACACAAAu -3'
miRNA:   3'- -AUCCCGGCUGCGCCGCGUCUGUGUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.