miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7038 3' -64.5 NC_001876.1 + 11517 0.66 0.165705
Target:  5'- aGGCuCuGgcGCAGCgcgagcgcaccGGGCCggGGGCCGg -3'
miRNA:   3'- -UCG-GcCauCGUCGa----------CCCGGa-CCCGGC- -5'
7038 3' -64.5 NC_001876.1 + 25086 0.67 0.157424
Target:  5'- cGCaaCGGUAGCGGCgacggcggucaagaaGGGCCaGGGCa- -3'
miRNA:   3'- uCG--GCCAUCGUCGa--------------CCCGGaCCCGgc -5'
7038 3' -64.5 NC_001876.1 + 17105 0.67 0.156999
Target:  5'- cGCCGGUAuccacGgAGCcgUGGaUCUGGGCCGu -3'
miRNA:   3'- uCGGCCAU-----CgUCG--ACCcGGACCCGGC- -5'
7038 3' -64.5 NC_001876.1 + 22380 0.68 0.133314
Target:  5'- uGCCGGcGGcCAGCcGGGCCuugcUGGaaGCCGa -3'
miRNA:   3'- uCGGCCaUC-GUCGaCCCGG----ACC--CGGC- -5'
7038 3' -64.5 NC_001876.1 + 128 0.68 0.122746
Target:  5'- gAGgCGGcGGC-GCUGGGCg-GGGCUGa -3'
miRNA:   3'- -UCgGCCaUCGuCGACCCGgaCCCGGC- -5'
7038 3' -64.5 NC_001876.1 + 34319 0.68 0.122746
Target:  5'- gAGgCGGcGGC-GCUGGGCg-GGGCUGa -3'
miRNA:   3'- -UCgGCCaUCGuCGACCCGgaCCCGGC- -5'
7038 3' -64.5 NC_001876.1 + 14755 0.68 0.122408
Target:  5'- cGCCGacaAGUGGCgaGGGCCcgcagggUGGGCCGg -3'
miRNA:   3'- uCGGCca-UCGUCGa-CCCGG-------ACCCGGC- -5'
7038 3' -64.5 NC_001876.1 + 12957 0.69 0.106847
Target:  5'- gAGgCGGUGGUGGCUGGGCCUu--CCa -3'
miRNA:   3'- -UCgGCCAUCGUCGACCCGGAcccGGc -5'
7038 3' -64.5 NC_001876.1 + 22915 0.7 0.092897
Target:  5'- --aCGGUGGguGUggGuGGUCUGGGCCGc -3'
miRNA:   3'- ucgGCCAUCguCGa-C-CCGGACCCGGC- -5'
7038 3' -64.5 NC_001876.1 + 5099 0.71 0.078435
Target:  5'- uGGCUGugggcgucuccGUGGCAGCggGGGCaCUGGGUCu -3'
miRNA:   3'- -UCGGC-----------CAUCGUCGa-CCCG-GACCCGGc -5'
7038 3' -64.5 NC_001876.1 + 28731 0.71 0.072036
Target:  5'- cGCC-GUGG-AGCUGGGCUcGGGCCu -3'
miRNA:   3'- uCGGcCAUCgUCGACCCGGaCCCGGc -5'
7038 3' -64.5 NC_001876.1 + 15560 1.07 8.4e-05
Target:  5'- cAGCCGGUAGCAGCUGGGCCUGGGCCGc -3'
miRNA:   3'- -UCGGCCAUCGUCGACCCGGACCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.