miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7039 3' -58.4 NC_001876.1 + 20202 0.66 0.350847
Target:  5'- -gGGGGUagGGguGGCCcuCGCGCGGaGCg -3'
miRNA:   3'- uaUCCCG--UCguUCGGc-GCGCGUCaUG- -5'
7039 3' -58.4 NC_001876.1 + 11083 0.67 0.309132
Target:  5'- --cGGGCcccGGCAaagcGGCCGC-CGCGGUcGCg -3'
miRNA:   3'- uauCCCG---UCGU----UCGGCGcGCGUCA-UG- -5'
7039 3' -58.4 NC_001876.1 + 14544 0.67 0.306753
Target:  5'- cUGGGGCAGCcgcaccggucggguGGGUCGCcGCGCAa--- -3'
miRNA:   3'- uAUCCCGUCG--------------UUCGGCG-CGCGUcaug -5'
7039 3' -58.4 NC_001876.1 + 18175 0.68 0.257251
Target:  5'- -gGGGGCAaaggaguuGUAGGCCGUGcCGCuGUAa -3'
miRNA:   3'- uaUCCCGU--------CGUUCGGCGC-GCGuCAUg -5'
7039 3' -58.4 NC_001876.1 + 25758 0.69 0.23665
Target:  5'- -gAGGGCGGCGagaaucgugucggAGCUGCagaGCAGUAUu -3'
miRNA:   3'- uaUCCCGUCGU-------------UCGGCGcg-CGUCAUG- -5'
7039 3' -58.4 NC_001876.1 + 14769 0.7 0.195748
Target:  5'- -gAGGGCccgcagGGUggGCCgGCGCGCGGccGCu -3'
miRNA:   3'- uaUCCCG------UCGuuCGG-CGCGCGUCa-UG- -5'
7039 3' -58.4 NC_001876.1 + 14328 0.72 0.143309
Target:  5'- -aGGGGCAGgAucuucGCCGCGCGuCAGUc- -3'
miRNA:   3'- uaUCCCGUCgUu----CGGCGCGC-GUCAug -5'
7039 3' -58.4 NC_001876.1 + 16577 0.73 0.110311
Target:  5'- --cGGGCGGC-GGCCGCcuGCGCGGggGCu -3'
miRNA:   3'- uauCCCGUCGuUCGGCG--CGCGUCa-UG- -5'
7039 3' -58.4 NC_001876.1 + 16299 0.74 0.100693
Target:  5'- --cGGGCAGCAgcgccgcGGCCGCG-GCAGcGCu -3'
miRNA:   3'- uauCCCGUCGU-------UCGGCGCgCGUCaUG- -5'
7039 3' -58.4 NC_001876.1 + 152 0.81 0.028388
Target:  5'- -gAGGGCGGCGggGGCgGCGCGCGGgGCg -3'
miRNA:   3'- uaUCCCGUCGU--UCGgCGCGCGUCaUG- -5'
7039 3' -58.4 NC_001876.1 + 34295 0.81 0.028388
Target:  5'- -gAGGGCGGCGggGGCgGCGCGCGGgGCg -3'
miRNA:   3'- uaUCCCGUCGU--UCGgCGCGCGUCaUG- -5'
7039 3' -58.4 NC_001876.1 + 16139 1.08 0.000217
Target:  5'- aAUAGGGCAGCAAGCCGCGCGCAGUACg -3'
miRNA:   3'- -UAUCCCGUCGUUCGGCGCGCGUCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.