miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7039 5' -60.7 NC_001876.1 + 112 0.66 0.344382
Target:  5'- -gGCGGagcGCGuCGCGGaGGCggcgGCGCuGGg -3'
miRNA:   3'- cgUGCCa--CGU-GCGCC-CCGaa--CGCG-CC- -5'
7039 5' -60.7 NC_001876.1 + 34335 0.66 0.344382
Target:  5'- -gGCGGagcGCGuCGCGGaGGCggcgGCGCuGGg -3'
miRNA:   3'- cgUGCCa--CGU-GCGCC-CCGaa--CGCG-CC- -5'
7039 5' -60.7 NC_001876.1 + 17632 0.66 0.336247
Target:  5'- -gGCGGUGCuauUGagGGGGCgcGCaGCGGu -3'
miRNA:   3'- cgUGCCACGu--GCg-CCCCGaaCG-CGCC- -5'
7039 5' -60.7 NC_001876.1 + 26315 0.67 0.305121
Target:  5'- gGCGCGGU-CugGa-GGGCaggGCGUGGa -3'
miRNA:   3'- -CGUGCCAcGugCgcCCCGaa-CGCGCC- -5'
7039 5' -60.7 NC_001876.1 + 15185 0.68 0.256066
Target:  5'- aUACGGUGCuGCGCGuucucgccuGGGCcguUUGCGCu- -3'
miRNA:   3'- cGUGCCACG-UGCGC---------CCCG---AACGCGcc -5'
7039 5' -60.7 NC_001876.1 + 26946 0.68 0.231048
Target:  5'- aGCGCGGggGagACGCGGagggugagcGGCUUGC-CGGg -3'
miRNA:   3'- -CGUGCCa-Cg-UGCGCC---------CCGAACGcGCC- -5'
7039 5' -60.7 NC_001876.1 + 783 0.7 0.172727
Target:  5'- uCACgGGUGaCACagaaGCGGGGacagGCGCGGg -3'
miRNA:   3'- cGUG-CCAC-GUG----CGCCCCgaa-CGCGCC- -5'
7039 5' -60.7 NC_001876.1 + 16573 0.71 0.163648
Target:  5'- cGCGCGG-GCG-GCGGccGCcUGCGCGGg -3'
miRNA:   3'- -CGUGCCaCGUgCGCCc-CGaACGCGCC- -5'
7039 5' -60.7 NC_001876.1 + 158 0.87 0.009452
Target:  5'- gGCGgGGgcgGCGCGCGGGGCggcGCGCGGg -3'
miRNA:   3'- -CGUgCCa--CGUGCGCCCCGaa-CGCGCC- -5'
7039 5' -60.7 NC_001876.1 + 34289 0.87 0.009452
Target:  5'- gGCGgGGgcgGCGCGCGGGGCggcGCGCGGg -3'
miRNA:   3'- -CGUgCCa--CGUGCGCCCCGaa-CGCGCC- -5'
7039 5' -60.7 NC_001876.1 + 16105 1.11 0.000129
Target:  5'- aGCACGGUGCACGCGGGGCUUGCGCGGc -3'
miRNA:   3'- -CGUGCCACGUGCGCCCCGAACGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.