miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7047 5' -55.7 NC_001876.1 + 11716 1.1 0.000401
Target:  5'- uCAAACCAGCCGGCACGGUUCGCAGACg -3'
miRNA:   3'- -GUUUGGUCGGCCGUGCCAAGCGUCUG- -5'
7047 5' -55.7 NC_001876.1 + 30208 0.66 0.511627
Target:  5'- -cAACCAGCUGGaagugccccuCGGUcaagguuuggaaaUUGCAGACg -3'
miRNA:   3'- guUUGGUCGGCCgu--------GCCA-------------AGCGUCUG- -5'
7047 5' -55.7 NC_001876.1 + 14770 0.66 0.517079
Target:  5'- aGGGCCcgcagggugGGCCGGCGCGcGgccgcuaucgcaGCAGACg -3'
miRNA:   3'- gUUUGG---------UCGGCCGUGC-Caag---------CGUCUG- -5'
7047 5' -55.7 NC_001876.1 + 152 0.66 0.556959
Target:  5'- gAGGgCGGCgGGgGCGGcgCGCGGGg -3'
miRNA:   3'- gUUUgGUCGgCCgUGCCaaGCGUCUg -5'
7047 5' -55.7 NC_001876.1 + 18348 0.68 0.419267
Target:  5'- gGuuCCGGCUGGUACGuaguGUUCGCAuACa -3'
miRNA:   3'- gUuuGGUCGGCCGUGC----CAAGCGUcUG- -5'
7047 5' -55.7 NC_001876.1 + 11771 0.67 0.491135
Target:  5'- gCGAACCGuGCCGGC-UGGUUUGaaaaaAGAa -3'
miRNA:   3'- -GUUUGGU-CGGCCGuGCCAAGCg----UCUg -5'
7047 5' -55.7 NC_001876.1 + 16596 0.66 0.512716
Target:  5'- ----gCGGCCGaGCA-GGUaCGCAGACc -3'
miRNA:   3'- guuugGUCGGC-CGUgCCAaGCGUCUG- -5'
7047 5' -55.7 NC_001876.1 + 4950 0.66 0.523652
Target:  5'- gCAGGCuCAGCCugaGGCGCucgcuGGUcaGCAGACa -3'
miRNA:   3'- -GUUUG-GUCGG---CCGUG-----CCAagCGUCUG- -5'
7047 5' -55.7 NC_001876.1 + 12544 0.66 0.545781
Target:  5'- --cACCGGgCGGCgGCGGUggugugugcgCGCgAGACg -3'
miRNA:   3'- guuUGGUCgGCCG-UGCCAa---------GCG-UCUG- -5'
7047 5' -55.7 NC_001876.1 + 11074 0.66 0.545781
Target:  5'- gCAAAgCGGCCGcCGCGGUcgCGCGaguuGGCg -3'
miRNA:   3'- -GUUUgGUCGGCcGUGCCAa-GCGU----CUG- -5'
7047 5' -55.7 NC_001876.1 + 34295 0.66 0.556959
Target:  5'- gAGGgCGGCgGGgGCGGcgCGCGGGg -3'
miRNA:   3'- gUUUgGUCGgCCgUGCCaaGCGUCUg -5'
7047 5' -55.7 NC_001876.1 + 20287 0.69 0.381168
Target:  5'- --cGCCAGagGGUGCGG-UCGCAGAg -3'
miRNA:   3'- guuUGGUCggCCGUGCCaAGCGUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.