miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7048 5' -56.4 NC_001876.1 + 16217 0.66 0.511474
Target:  5'- cGGGCAGgCgCACaCCCGAGCU-CGuGUa -3'
miRNA:   3'- -CUCGUUgGgGUG-GGGCUCGAuGUuCG- -5'
7048 5' -56.4 NC_001876.1 + 26537 0.66 0.500683
Target:  5'- uGAGCAgaaACCCCuucauGCUugUgGGGCUugAAGCg -3'
miRNA:   3'- -CUCGU---UGGGG-----UGG--GgCUCGAugUUCG- -5'
7048 5' -56.4 NC_001876.1 + 161 0.66 0.500683
Target:  5'- -cGCGacgcGCUCCGCCCCacAGUUACGucAGCa -3'
miRNA:   3'- cuCGU----UGGGGUGGGGc-UCGAUGU--UCG- -5'
7048 5' -56.4 NC_001876.1 + 34286 0.66 0.500683
Target:  5'- -cGCGacgcGCUCCGCCCCacAGUUACGucAGCa -3'
miRNA:   3'- cuCGU----UGGGGUGGGGc-UCGAUGU--UCG- -5'
7048 5' -56.4 NC_001876.1 + 11289 0.66 0.500683
Target:  5'- -cGCAGCCCCAggcgaaCCG-GUUugGAGCc -3'
miRNA:   3'- cuCGUUGGGGUgg----GGCuCGAugUUCG- -5'
7048 5' -56.4 NC_001876.1 + 17380 0.66 0.489993
Target:  5'- gGGGCAaggucACCaCCGCCaCCGgcGGCUuugaggauGCGGGCa -3'
miRNA:   3'- -CUCGU-----UGG-GGUGG-GGC--UCGA--------UGUUCG- -5'
7048 5' -56.4 NC_001876.1 + 14609 0.66 0.479411
Target:  5'- cGGCGACCCa--CCCGAccggugcgGCUGCcccAGGCg -3'
miRNA:   3'- cUCGUUGGGgugGGGCU--------CGAUG---UUCG- -5'
7048 5' -56.4 NC_001876.1 + 26850 0.66 0.468943
Target:  5'- aAGCugacguCCCUACCUgucaCGAGCccgGCAAGCc -3'
miRNA:   3'- cUCGuu----GGGGUGGG----GCUCGa--UGUUCG- -5'
7048 5' -56.4 NC_001876.1 + 11161 0.66 0.468943
Target:  5'- aAGCcugGGCCCCGCCCCuuccaauccuAGuUUGCAGGCu -3'
miRNA:   3'- cUCG---UUGGGGUGGGGc---------UC-GAUGUUCG- -5'
7048 5' -56.4 NC_001876.1 + 9000 0.67 0.448364
Target:  5'- aGAG--GCCgCGCCgCGGGCUgggGCAGGCu -3'
miRNA:   3'- -CUCguUGGgGUGGgGCUCGA---UGUUCG- -5'
7048 5' -56.4 NC_001876.1 + 2840 0.67 0.428296
Target:  5'- -uGUAGCCCUGCCCCaGuguGCUuucuACAAGUc -3'
miRNA:   3'- cuCGUUGGGGUGGGG-Cu--CGA----UGUUCG- -5'
7048 5' -56.4 NC_001876.1 + 24401 0.67 0.408769
Target:  5'- cGAcCAACCCCGCCCUGcucAGCgagaccCAAGUu -3'
miRNA:   3'- -CUcGUUGGGGUGGGGC---UCGau----GUUCG- -5'
7048 5' -56.4 NC_001876.1 + 15498 0.67 0.408769
Target:  5'- aGGCGGCCCagGCCCagcuGCUACcGGCu -3'
miRNA:   3'- cUCGUUGGGg-UGGGgcu-CGAUGuUCG- -5'
7048 5' -56.4 NC_001876.1 + 16217 0.67 0.408769
Target:  5'- aGGGCGAcuCCCCGCCUCaGcGCUGCcgcGGCc -3'
miRNA:   3'- -CUCGUU--GGGGUGGGG-CuCGAUGu--UCG- -5'
7048 5' -56.4 NC_001876.1 + 16625 0.67 0.408769
Target:  5'- aGGCGGCCgCCGCCCgCGcgccuucugcGGCggcCGAGCa -3'
miRNA:   3'- cUCGUUGG-GGUGGG-GC----------UCGau-GUUCG- -5'
7048 5' -56.4 NC_001876.1 + 13205 0.68 0.389806
Target:  5'- uAGCAACCaCAgCaUCGAGCUagACGAGCg -3'
miRNA:   3'- cUCGUUGGgGUgG-GGCUCGA--UGUUCG- -5'
7048 5' -56.4 NC_001876.1 + 12901 0.68 0.380543
Target:  5'- gGGGCGauGCUCCAgCCCGAaCUGCA-GCc -3'
miRNA:   3'- -CUCGU--UGGGGUgGGGCUcGAUGUuCG- -5'
7048 5' -56.4 NC_001876.1 + 11352 0.68 0.362464
Target:  5'- uGGCuccaAACCgguUCGCCUgGGGCUGCGAGCc -3'
miRNA:   3'- cUCG----UUGG---GGUGGGgCUCGAUGUUCG- -5'
7048 5' -56.4 NC_001876.1 + 7775 0.68 0.35365
Target:  5'- aAGC-AUCCCGgCCCGcGCUgACAGGCc -3'
miRNA:   3'- cUCGuUGGGGUgGGGCuCGA-UGUUCG- -5'
7048 5' -56.4 NC_001876.1 + 19346 0.69 0.311885
Target:  5'- aAGCGGCCgUugCCCaGcAGCUGgGAGCg -3'
miRNA:   3'- cUCGUUGGgGugGGG-C-UCGAUgUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.