miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7049 5' -57.6 NC_001876.1 + 16334 0.66 0.447318
Target:  5'- gGCCGCUUgGCGgaugCUagggugaUAGCG-CACGCCGg -3'
miRNA:   3'- -UGGCGGA-CGUa---GG-------AUCGUaGUGCGGC- -5'
7049 5' -57.6 NC_001876.1 + 16585 0.66 0.422541
Target:  5'- gGCCGCCUGCgcGggggcuuccuuccccUCCUGGCucccAUCAUugcaGCCGc -3'
miRNA:   3'- -UGGCGGACG--U---------------AGGAUCG----UAGUG----CGGC- -5'
7049 5' -57.6 NC_001876.1 + 26340 0.67 0.399547
Target:  5'- aACUGCCUGgAUCCUAuGCccccGUgGCGCgGu -3'
miRNA:   3'- -UGGCGGACgUAGGAU-CG----UAgUGCGgC- -5'
7049 5' -57.6 NC_001876.1 + 14724 0.67 0.354297
Target:  5'- cACUGcCCUGCAgcgacggguUCgUAGCGU-ACGCCGa -3'
miRNA:   3'- -UGGC-GGACGU---------AGgAUCGUAgUGCGGC- -5'
7049 5' -57.6 NC_001876.1 + 33404 0.67 0.354297
Target:  5'- cACCGCCUuucgacgugaGCAUUCUGGCAcagUCuuCGCUa -3'
miRNA:   3'- -UGGCGGA----------CGUAGGAUCGU---AGu-GCGGc -5'
7049 5' -57.6 NC_001876.1 + 33548 0.67 0.354297
Target:  5'- cACCGCCUuucgacgugaGCAUUCUGGCAcagUCuuCGCUa -3'
miRNA:   3'- -UGGCGGA----------CGUAGGAUCGU---AGu-GCGGc -5'
7049 5' -57.6 NC_001876.1 + 14868 0.68 0.343139
Target:  5'- cGCCGCCauggccauggccGCGUCUgcugcgaUAGCGgccgCGCGCCGg -3'
miRNA:   3'- -UGGCGGa-----------CGUAGG-------AUCGUa---GUGCGGC- -5'
7049 5' -57.6 NC_001876.1 + 14157 0.69 0.297244
Target:  5'- gGCCcCCUGCG-CCUAcCAUCACGUCc -3'
miRNA:   3'- -UGGcGGACGUaGGAUcGUAGUGCGGc -5'
7049 5' -57.6 NC_001876.1 + 14717 0.69 0.282308
Target:  5'- cGCCGUCUGCGgcgCCgguacuggcgGGCGUCA-GCCa -3'
miRNA:   3'- -UGGCGGACGUa--GGa---------UCGUAGUgCGGc -5'
7049 5' -57.6 NC_001876.1 + 9857 0.69 0.275067
Target:  5'- gGCCGCggGCAucUCCUGGaUGUCGCGUCa -3'
miRNA:   3'- -UGGCGgaCGU--AGGAUC-GUAGUGCGGc -5'
7049 5' -57.6 NC_001876.1 + 20881 0.69 0.267273
Target:  5'- cGCCGCCUGCggucuGUUCUGcuGCAUguuccucCACGCCu -3'
miRNA:   3'- -UGGCGGACG-----UAGGAU--CGUA-------GUGCGGc -5'
7049 5' -57.6 NC_001876.1 + 10108 0.72 0.183611
Target:  5'- uACCGCCUGaGUCaacGC-UCGCGCCGg -3'
miRNA:   3'- -UGGCGGACgUAGgauCGuAGUGCGGC- -5'
7049 5' -57.6 NC_001876.1 + 16257 0.72 0.164226
Target:  5'- uGCUGCCcgGCGUgcgcuaucacCCUAGCAUC-CGCCa -3'
miRNA:   3'- -UGGCGGa-CGUA----------GGAUCGUAGuGCGGc -5'
7049 5' -57.6 NC_001876.1 + 16105 1.08 0.00031
Target:  5'- uACCGCCUGCAUCCUAGCAUCACGCCGa -3'
miRNA:   3'- -UGGCGGACGUAGGAUCGUAGUGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.