miRNA display CGI


Results 1 - 15 of 15 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7050 5' -59.2 NC_001876.1 + 16637 0.66 0.357066
Target:  5'- ----aAGCccCCGCgCAGGCGGCCGCc -3'
miRNA:   3'- ugggaUCGuaGGCG-GUUCGCCGGUGu -5'
7050 5' -59.2 NC_001876.1 + 14586 0.66 0.331682
Target:  5'- aGCUUUAGCcgaUGCCGucGCGGCCACc -3'
miRNA:   3'- -UGGGAUCGuagGCGGUu-CGCCGGUGu -5'
7050 5' -59.2 NC_001876.1 + 34255 0.67 0.307649
Target:  5'- cGCCCUcAGCc-CCGCCcAGCGccGCCGCc -3'
miRNA:   3'- -UGGGA-UCGuaGGCGGuUCGC--CGGUGu -5'
7050 5' -59.2 NC_001876.1 + 192 0.67 0.307649
Target:  5'- cGCCCUcAGCc-CCGCCcAGCGccGCCGCc -3'
miRNA:   3'- -UGGGA-UCGuaGGCGGuUCGC--CGGUGu -5'
7050 5' -59.2 NC_001876.1 + 14772 0.67 0.29238
Target:  5'- gGCCCgcagGGUGggCCGgCGcGCGGCCGCu -3'
miRNA:   3'- -UGGGa---UCGUa-GGCgGUuCGCCGGUGu -5'
7050 5' -59.2 NC_001876.1 + 10105 0.67 0.29238
Target:  5'- cGCCUgAGuCAacgcUCgCGCC-GGCGGCCGCAg -3'
miRNA:   3'- -UGGGaUC-GU----AG-GCGGuUCGCCGGUGU- -5'
7050 5' -59.2 NC_001876.1 + 22412 0.67 0.276992
Target:  5'- aGCCCcAGCcgcugaggCCGCCGcucccgcccugccGGCGGCCAg- -3'
miRNA:   3'- -UGGGaUCGua------GGCGGU-------------UCGCCGGUgu -5'
7050 5' -59.2 NC_001876.1 + 9887 0.69 0.218899
Target:  5'- gGCCCgggAGUAcgccagggCCGCCAuuuCGGCCGCGg -3'
miRNA:   3'- -UGGGa--UCGUa-------GGCGGUuc-GCCGGUGU- -5'
7050 5' -59.2 NC_001876.1 + 11081 0.69 0.213065
Target:  5'- gGCCCcGGCAaagcggCCGCC--GCGGUCGCGc -3'
miRNA:   3'- -UGGGaUCGUa-----GGCGGuuCGCCGGUGU- -5'
7050 5' -59.2 NC_001876.1 + 22327 0.69 0.206803
Target:  5'- gGCCC-GGCuggCCGCCGgcagggcgggagcGGCGGCCuCAg -3'
miRNA:   3'- -UGGGaUCGua-GGCGGU-------------UCGCCGGuGU- -5'
7050 5' -59.2 NC_001876.1 + 14859 0.69 0.201798
Target:  5'- gGCCauggccGCGUCUGCUgcgauAGCGGCCGCGc -3'
miRNA:   3'- -UGGgau---CGUAGGCGGu----UCGCCGGUGU- -5'
7050 5' -59.2 NC_001876.1 + 16229 0.69 0.201798
Target:  5'- cGCCUcAGCG-CUGCC--GCGGCCGCGg -3'
miRNA:   3'- -UGGGaUCGUaGGCGGuuCGCCGGUGU- -5'
7050 5' -59.2 NC_001876.1 + 10997 0.75 0.082902
Target:  5'- uACCUgGGC-UCCGCCAacucgcgcgaccgcGGCGGCCGCu -3'
miRNA:   3'- -UGGGaUCGuAGGCGGU--------------UCGCCGGUGu -5'
7050 5' -59.2 NC_001876.1 + 1900 0.76 0.070117
Target:  5'- cGCCCUGGCcUUCaGCCAuAGCGGCaCGCAg -3'
miRNA:   3'- -UGGGAUCGuAGG-CGGU-UCGCCG-GUGU- -5'
7050 5' -59.2 NC_001876.1 + 16277 1.08 0.000218
Target:  5'- cACCCUAGCAUCCGCCAAGCGGCCACAg -3'
miRNA:   3'- -UGGGAUCGUAGGCGGUUCGCCGGUGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.