miRNA display CGI


Results 1 - 13 of 13 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7051 3' -69.2 NC_001876.1 + 16300 0.66 0.131966
Target:  5'- cCGGGCagcagcgccGCGGCCGCggcagcgCUGagGCGGGGa -3'
miRNA:   3'- cGCCCGc--------CGCCGGCG-------GACg-CGCCCCc -5'
7051 3' -69.2 NC_001876.1 + 22784 0.66 0.113043
Target:  5'- gGCGGGCGGCucggGGCUGCUg--GUGGGc- -3'
miRNA:   3'- -CGCCCGCCG----CCGGCGGacgCGCCCcc -5'
7051 3' -69.2 NC_001876.1 + 24841 0.68 0.084367
Target:  5'- cGCGGaaGGCccGGCUGCCgacaUGCuGCGGGGu -3'
miRNA:   3'- -CGCCcgCCG--CCGGCGG----ACG-CGCCCCc -5'
7051 3' -69.2 NC_001876.1 + 22348 0.68 0.077837
Target:  5'- gGCGGGa-GCGGCgGCCUcaGCGgCuGGGGc -3'
miRNA:   3'- -CGCCCgcCGCCGgCGGA--CGC-GcCCCC- -5'
7051 3' -69.2 NC_001876.1 + 10025 0.69 0.071792
Target:  5'- gGCGGGgGuuccugcuGCGGCCGCCgGCGCGagcguugacucaGGcGGu -3'
miRNA:   3'- -CGCCCgC--------CGCCGGCGGaCGCGC------------CC-CC- -5'
7051 3' -69.2 NC_001876.1 + 16628 0.69 0.0662
Target:  5'- cGCaGGCGGCcGCCGCCcGCGCGccuucugcGGcGGc -3'
miRNA:   3'- -CGcCCGCCGcCGGCGGaCGCGC--------CC-CC- -5'
7051 3' -69.2 NC_001876.1 + 12542 0.7 0.059233
Target:  5'- cCGGGCGGCGGCgguggugugugcgCGCgaGaCGCGGGc- -3'
miRNA:   3'- cGCCCGCCGCCG-------------GCGgaC-GCGCCCcc -5'
7051 3' -69.2 NC_001876.1 + 124 0.73 0.032515
Target:  5'- cGCGGa-GGCGGCgGCgCUGgGCGGGGc -3'
miRNA:   3'- -CGCCcgCCGCCGgCG-GACgCGCCCCc -5'
7051 3' -69.2 NC_001876.1 + 34323 0.73 0.032515
Target:  5'- cGCGGa-GGCGGCgGCgCUGgGCGGGGc -3'
miRNA:   3'- -CGCCcgCCGCCGgCG-GACgCGCCCCc -5'
7051 3' -69.2 NC_001876.1 + 11018 0.74 0.028325
Target:  5'- cGCGaccGCGGCGGCCGCuUUGC-CGGGGc -3'
miRNA:   3'- -CGCc--CGCCGCCGGCG-GACGcGCCCCc -5'
7051 3' -69.2 NC_001876.1 + 34289 0.75 0.023995
Target:  5'- gGCGGG-GGCGGCgCGCggggcgGCGCGcGGGGc -3'
miRNA:   3'- -CGCCCgCCGCCG-GCGga----CGCGC-CCCC- -5'
7051 3' -69.2 NC_001876.1 + 158 0.75 0.023995
Target:  5'- gGCGGG-GGCGGCgCGCggggcgGCGCGcGGGGc -3'
miRNA:   3'- -CGCCCgCCGCCG-GCGga----CGCGC-CCCC- -5'
7051 3' -69.2 NC_001876.1 + 16575 1.09 0.000028
Target:  5'- cGCGGGCGGCGGCCGCCUGCGCGGGGGc -3'
miRNA:   3'- -CGCCCGCCGCCGGCGGACGCGCCCCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.