Results 1 - 13 of 13 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7051 | 3' | -69.2 | NC_001876.1 | + | 34323 | 0.73 | 0.032515 |
Target: 5'- cGCGGa-GGCGGCgGCgCUGgGCGGGGc -3' miRNA: 3'- -CGCCcgCCGCCGgCG-GACgCGCCCCc -5' |
|||||||
7051 | 3' | -69.2 | NC_001876.1 | + | 34289 | 0.75 | 0.023995 |
Target: 5'- gGCGGG-GGCGGCgCGCggggcgGCGCGcGGGGc -3' miRNA: 3'- -CGCCCgCCGCCG-GCGga----CGCGC-CCCC- -5' |
|||||||
7051 | 3' | -69.2 | NC_001876.1 | + | 24841 | 0.68 | 0.084367 |
Target: 5'- cGCGGaaGGCccGGCUGCCgacaUGCuGCGGGGu -3' miRNA: 3'- -CGCCcgCCG--CCGGCGG----ACG-CGCCCCc -5' |
|||||||
7051 | 3' | -69.2 | NC_001876.1 | + | 22784 | 0.66 | 0.113043 |
Target: 5'- gGCGGGCGGCucggGGCUGCUg--GUGGGc- -3' miRNA: 3'- -CGCCCGCCG----CCGGCGGacgCGCCCcc -5' |
|||||||
7051 | 3' | -69.2 | NC_001876.1 | + | 22348 | 0.68 | 0.077837 |
Target: 5'- gGCGGGa-GCGGCgGCCUcaGCGgCuGGGGc -3' miRNA: 3'- -CGCCCgcCGCCGgCGGA--CGC-GcCCCC- -5' |
|||||||
7051 | 3' | -69.2 | NC_001876.1 | + | 16628 | 0.69 | 0.0662 |
Target: 5'- cGCaGGCGGCcGCCGCCcGCGCGccuucugcGGcGGc -3' miRNA: 3'- -CGcCCGCCGcCGGCGGaCGCGC--------CC-CC- -5' |
|||||||
7051 | 3' | -69.2 | NC_001876.1 | + | 16575 | 1.09 | 0.000028 |
Target: 5'- cGCGGGCGGCGGCCGCCUGCGCGGGGGc -3' miRNA: 3'- -CGCCCGCCGCCGGCGGACGCGCCCCC- -5' |
|||||||
7051 | 3' | -69.2 | NC_001876.1 | + | 16300 | 0.66 | 0.131966 |
Target: 5'- cCGGGCagcagcgccGCGGCCGCggcagcgCUGagGCGGGGa -3' miRNA: 3'- cGCCCGc--------CGCCGGCG-------GACg-CGCCCCc -5' |
|||||||
7051 | 3' | -69.2 | NC_001876.1 | + | 12542 | 0.7 | 0.059233 |
Target: 5'- cCGGGCGGCGGCgguggugugugcgCGCgaGaCGCGGGc- -3' miRNA: 3'- cGCCCGCCGCCG-------------GCGgaC-GCGCCCcc -5' |
|||||||
7051 | 3' | -69.2 | NC_001876.1 | + | 11018 | 0.74 | 0.028325 |
Target: 5'- cGCGaccGCGGCGGCCGCuUUGC-CGGGGc -3' miRNA: 3'- -CGCc--CGCCGCCGGCG-GACGcGCCCCc -5' |
|||||||
7051 | 3' | -69.2 | NC_001876.1 | + | 10025 | 0.69 | 0.071792 |
Target: 5'- gGCGGGgGuuccugcuGCGGCCGCCgGCGCGagcguugacucaGGcGGu -3' miRNA: 3'- -CGCCCgC--------CGCCGGCGGaCGCGC------------CC-CC- -5' |
|||||||
7051 | 3' | -69.2 | NC_001876.1 | + | 158 | 0.75 | 0.023995 |
Target: 5'- gGCGGG-GGCGGCgCGCggggcgGCGCGcGGGGc -3' miRNA: 3'- -CGCCCgCCGCCG-GCGga----CGCGC-CCCC- -5' |
|||||||
7051 | 3' | -69.2 | NC_001876.1 | + | 124 | 0.73 | 0.032515 |
Target: 5'- cGCGGa-GGCGGCgGCgCUGgGCGGGGc -3' miRNA: 3'- -CGCCcgCCGCCGgCG-GACgCGCCCCc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home