miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7051 5' -55.8 NC_001876.1 + 22653 0.66 0.551627
Target:  5'- -gCCCua-GgcGCGGCCGCU-UCGGCc -3'
miRNA:   3'- gaGGGuagUaaCGUCGGCGGuAGCCG- -5'
7051 5' -55.8 NC_001876.1 + 14600 0.66 0.507633
Target:  5'- -aCCCGaCcggUGCGGCUGCCccaggCGGCc -3'
miRNA:   3'- gaGGGUaGua-ACGUCGGCGGua---GCCG- -5'
7051 5' -55.8 NC_001876.1 + 7929 0.66 0.507633
Target:  5'- gUCCCGUCuucagucugaccgUGCAGCCGUaggguacugcguUUGGCg -3'
miRNA:   3'- gAGGGUAGua-----------ACGUCGGCGgu----------AGCCG- -5'
7051 5' -55.8 NC_001876.1 + 15309 0.66 0.507633
Target:  5'- -gCUCGUCGUccucaaAGCCGUCAUCGGg -3'
miRNA:   3'- gaGGGUAGUAacg---UCGGCGGUAGCCg -5'
7051 5' -55.8 NC_001876.1 + 25553 0.68 0.434612
Target:  5'- gCUCCCGaagcUUGUcGCGGCCcucggugcuugcGUCGUCGGCc -3'
miRNA:   3'- -GAGGGU----AGUAaCGUCGG------------CGGUAGCCG- -5'
7051 5' -55.8 NC_001876.1 + 16223 0.68 0.414882
Target:  5'- aCUCCCcgccUCAgcGCuGCCGCgGccgCGGCg -3'
miRNA:   3'- -GAGGGu---AGUaaCGuCGGCGgUa--GCCG- -5'
7051 5' -55.8 NC_001876.1 + 29052 0.68 0.405226
Target:  5'- gUCCagaucuUCAgcggaagagGCA-CCGCCAUCGGCa -3'
miRNA:   3'- gAGGgu----AGUaa-------CGUcGGCGGUAGCCG- -5'
7051 5' -55.8 NC_001876.1 + 16634 0.68 0.387273
Target:  5'- -cCCCcgCGcagGCGGCCGCCGcccgcgcgccuucugCGGCg -3'
miRNA:   3'- gaGGGuaGUaa-CGUCGGCGGUa--------------GCCG- -5'
7051 5' -55.8 NC_001876.1 + 11079 0.71 0.285769
Target:  5'- -cCCCggCAaaGCGGCCGCCG-CGGUc -3'
miRNA:   3'- gaGGGuaGUaaCGUCGGCGGUaGCCG- -5'
7051 5' -55.8 NC_001876.1 + 16618 1.12 0.000252
Target:  5'- gCUCCCAUCAUUGCAGCCGCCAUCGGCg -3'
miRNA:   3'- -GAGGGUAGUAACGUCGGCGGUAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.