miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7054 3' -53.5 NC_001876.1 + 30472 0.66 0.669495
Target:  5'- aGUGCUgaaccgAGUgAGCucaaaaagaguuuGCUGCCGGGgGCa -3'
miRNA:   3'- -CACGGua----UCAgUUG-------------UGACGGCCUgCG- -5'
7054 3' -53.5 NC_001876.1 + 29692 0.66 0.652174
Target:  5'- gGUGCCucgggcgcagaagGGUUAACGgUGCCGG-CGg -3'
miRNA:   3'- -CACGGua-----------UCAGUUGUgACGGCCuGCg -5'
7054 3' -53.5 NC_001876.1 + 3784 0.67 0.612805
Target:  5'- gGUGUUGUaaauaauccAGUCAuacugACugUGCUGGGCGUg -3'
miRNA:   3'- -CACGGUA---------UCAGU-----UGugACGGCCUGCG- -5'
7054 3' -53.5 NC_001876.1 + 18021 0.67 0.612805
Target:  5'- -aGCCGUGGgCGACAaccgggUGCUGGACa- -3'
miRNA:   3'- caCGGUAUCaGUUGUg-----ACGGCCUGcg -5'
7054 3' -53.5 NC_001876.1 + 27569 0.68 0.510643
Target:  5'- --aCCcUGGUCAACACUcacGCCGGA-GCu -3'
miRNA:   3'- cacGGuAUCAGUUGUGA---CGGCCUgCG- -5'
7054 3' -53.5 NC_001876.1 + 16229 0.69 0.488824
Target:  5'- -cGCC----UCAGCGCUGCCGcGGcCGCg -3'
miRNA:   3'- caCGGuaucAGUUGUGACGGC-CU-GCG- -5'
7054 3' -53.5 NC_001876.1 + 10580 0.69 0.467452
Target:  5'- -gGCCGUaagGGUCuu-GCUGCCGGgguucuGCGCg -3'
miRNA:   3'- caCGGUA---UCAGuugUGACGGCC------UGCG- -5'
7054 3' -53.5 NC_001876.1 + 13956 0.71 0.396756
Target:  5'- -cGCCgGUAGUCAGCAgUG-UGGugGCc -3'
miRNA:   3'- caCGG-UAUCAGUUGUgACgGCCugCG- -5'
7054 3' -53.5 NC_001876.1 + 10105 0.72 0.341911
Target:  5'- -cGCCugAGUCAACGCUcgcGCCGGcggcCGCa -3'
miRNA:   3'- caCGGuaUCAGUUGUGA---CGGCCu---GCG- -5'
7054 3' -53.5 NC_001876.1 + 7716 0.73 0.292755
Target:  5'- -gGCCu--GUCAGCGCggGCCgGGAUGCu -3'
miRNA:   3'- caCGGuauCAGUUGUGa-CGG-CCUGCG- -5'
7054 3' -53.5 NC_001876.1 + 20642 1.12 0.000437
Target:  5'- uGUGCCAUAGUCAACACUGCCGGACGCg -3'
miRNA:   3'- -CACGGUAUCAGUUGUGACGGCCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.