Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7054 | 3' | -53.5 | NC_001876.1 | + | 20642 | 1.12 | 0.000437 |
Target: 5'- uGUGCCAUAGUCAACACUGCCGGACGCg -3' miRNA: 3'- -CACGGUAUCAGUUGUGACGGCCUGCG- -5' |
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7054 | 3' | -53.5 | NC_001876.1 | + | 7716 | 0.73 | 0.292755 |
Target: 5'- -gGCCu--GUCAGCGCggGCCgGGAUGCu -3' miRNA: 3'- caCGGuauCAGUUGUGa-CGG-CCUGCG- -5' |
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7054 | 3' | -53.5 | NC_001876.1 | + | 10105 | 0.72 | 0.341911 |
Target: 5'- -cGCCugAGUCAACGCUcgcGCCGGcggcCGCa -3' miRNA: 3'- caCGGuaUCAGUUGUGA---CGGCCu---GCG- -5' |
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7054 | 3' | -53.5 | NC_001876.1 | + | 13956 | 0.71 | 0.396756 |
Target: 5'- -cGCCgGUAGUCAGCAgUG-UGGugGCc -3' miRNA: 3'- caCGG-UAUCAGUUGUgACgGCCugCG- -5' |
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7054 | 3' | -53.5 | NC_001876.1 | + | 10580 | 0.69 | 0.467452 |
Target: 5'- -gGCCGUaagGGUCuu-GCUGCCGGgguucuGCGCg -3' miRNA: 3'- caCGGUA---UCAGuugUGACGGCC------UGCG- -5' |
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7054 | 3' | -53.5 | NC_001876.1 | + | 16229 | 0.69 | 0.488824 |
Target: 5'- -cGCC----UCAGCGCUGCCGcGGcCGCg -3' miRNA: 3'- caCGGuaucAGUUGUGACGGC-CU-GCG- -5' |
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7054 | 3' | -53.5 | NC_001876.1 | + | 27569 | 0.68 | 0.510643 |
Target: 5'- --aCCcUGGUCAACACUcacGCCGGA-GCu -3' miRNA: 3'- cacGGuAUCAGUUGUGA---CGGCCUgCG- -5' |
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7054 | 3' | -53.5 | NC_001876.1 | + | 18021 | 0.67 | 0.612805 |
Target: 5'- -aGCCGUGGgCGACAaccgggUGCUGGACa- -3' miRNA: 3'- caCGGUAUCaGUUGUg-----ACGGCCUGcg -5' |
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7054 | 3' | -53.5 | NC_001876.1 | + | 3784 | 0.67 | 0.612805 |
Target: 5'- gGUGUUGUaaauaauccAGUCAuacugACugUGCUGGGCGUg -3' miRNA: 3'- -CACGGUA---------UCAGU-----UGugACGGCCUGCG- -5' |
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7054 | 3' | -53.5 | NC_001876.1 | + | 29692 | 0.66 | 0.652174 |
Target: 5'- gGUGCCucgggcgcagaagGGUUAACGgUGCCGG-CGg -3' miRNA: 3'- -CACGGua-----------UCAGUUGUgACGGCCuGCg -5' |
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7054 | 3' | -53.5 | NC_001876.1 | + | 30472 | 0.66 | 0.669495 |
Target: 5'- aGUGCUgaaccgAGUgAGCucaaaaagaguuuGCUGCCGGGgGCa -3' miRNA: 3'- -CACGGua----UCAgUUG-------------UGACGGCCUgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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