miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7055 3' -55.2 NC_001876.1 + 14768 0.66 0.559365
Target:  5'- cGAGGGCCcGCAGGGU---GGGCCg- -3'
miRNA:   3'- uCUUUCGGaCGUUUCGgaaCCCGGgg -5'
7055 3' -55.2 NC_001876.1 + 16536 0.66 0.548043
Target:  5'- aGGAGGGUCUGCGua-CCUgcucGGCCgCCg -3'
miRNA:   3'- -UCUUUCGGACGUuucGGAac--CCGG-GG- -5'
7055 3' -55.2 NC_001876.1 + 15560 0.67 0.503566
Target:  5'- ---cAGCCgguaGCAGcugGGCC-UGGGCCgCCu -3'
miRNA:   3'- ucuuUCGGa---CGUU---UCGGaACCCGG-GG- -5'
7055 3' -55.2 NC_001876.1 + 22115 0.67 0.481917
Target:  5'- cGcAGGCCUGgGGAcGaCCUcgUGGaGCCCCa -3'
miRNA:   3'- uCuUUCGGACgUUU-C-GGA--ACC-CGGGG- -5'
7055 3' -55.2 NC_001876.1 + 22649 0.67 0.471262
Target:  5'- -aGAAGCCcuagGCGcGGCCgcuucGGCCCCc -3'
miRNA:   3'- ucUUUCGGa---CGUuUCGGaac--CCGGGG- -5'
7055 3' -55.2 NC_001876.1 + 1944 0.67 0.45032
Target:  5'- gAGGAAGgCUGCGAAGUgCUccUGGaGCUCUg -3'
miRNA:   3'- -UCUUUCgGACGUUUCG-GA--ACC-CGGGG- -5'
7055 3' -55.2 NC_001876.1 + 4263 0.67 0.45032
Target:  5'- cAGAGuuCCUGUggGGCCggGGGUguaguuCCCu -3'
miRNA:   3'- -UCUUucGGACGuuUCGGaaCCCG------GGG- -5'
7055 3' -55.2 NC_001876.1 + 23539 0.68 0.4299
Target:  5'- -uGAGGCgCUGCcaGAAGCCgaGGaGCCCg -3'
miRNA:   3'- ucUUUCG-GACG--UUUCGGaaCC-CGGGg -5'
7055 3' -55.2 NC_001876.1 + 24551 0.68 0.4299
Target:  5'- cAGAGA-CCUGCAGucAGCCUgagGGGCg-- -3'
miRNA:   3'- -UCUUUcGGACGUU--UCGGAa--CCCGggg -5'
7055 3' -55.2 NC_001876.1 + 11311 0.69 0.39075
Target:  5'- -uGGAGCCauccuCGAAGCCgUGGuGCCCCc -3'
miRNA:   3'- ucUUUCGGac---GUUUCGGaACC-CGGGG- -5'
7055 3' -55.2 NC_001876.1 + 22714 0.69 0.39075
Target:  5'- gAGggGGCCgaaGCGGccgcGCCUaGGGCUUCu -3'
miRNA:   3'- -UCuuUCGGa--CGUUu---CGGAaCCCGGGG- -5'
7055 3' -55.2 NC_001876.1 + 8014 0.69 0.372068
Target:  5'- cGAGGGCCgagggGCGGccuuuGCCUUucGGGCCUg -3'
miRNA:   3'- uCUUUCGGa----CGUUu----CGGAA--CCCGGGg -5'
7055 3' -55.2 NC_001876.1 + 21975 0.69 0.372068
Target:  5'- uAGGcAGGCCaUGC-AGGCagugaaGGGCCCCg -3'
miRNA:   3'- -UCU-UUCGG-ACGuUUCGgaa---CCCGGGG- -5'
7055 3' -55.2 NC_001876.1 + 11984 0.69 0.362957
Target:  5'- cGGAAGUgaGUcgGGCCcUGGGCgCCg -3'
miRNA:   3'- uCUUUCGgaCGuuUCGGaACCCGgGG- -5'
7055 3' -55.2 NC_001876.1 + 30555 0.69 0.362054
Target:  5'- aAGAAGGaucuaaCUUGCAAGGCaCUUGGGaagugaagaacaaCCCCu -3'
miRNA:   3'- -UCUUUC------GGACGUUUCG-GAACCC-------------GGGG- -5'
7055 3' -55.2 NC_001876.1 + 20758 0.7 0.328085
Target:  5'- -aAAGGUCUGCGAGGC--UGGGUgCCa -3'
miRNA:   3'- ucUUUCGGACGUUUCGgaACCCGgGG- -5'
7055 3' -55.2 NC_001876.1 + 11242 0.7 0.30678
Target:  5'- uGGAauaAAGCCUGCAAacuaggauuggaaggGGCg--GGGCCCa -3'
miRNA:   3'- -UCU---UUCGGACGUU---------------UCGgaaCCCGGGg -5'
7055 3' -55.2 NC_001876.1 + 23677 0.73 0.196499
Target:  5'- -cAAAGCCUGgGccguGGCCUcGGGCUCCu -3'
miRNA:   3'- ucUUUCGGACgUu---UCGGAaCCCGGGG- -5'
7055 3' -55.2 NC_001876.1 + 11149 0.77 0.11341
Target:  5'- cGAAGcGCCc-CGAAGCC-UGGGCCCCg -3'
miRNA:   3'- uCUUU-CGGacGUUUCGGaACCCGGGG- -5'
7055 3' -55.2 NC_001876.1 + 21735 1.12 0.000278
Target:  5'- cAGAAAGCCUGCAAAGCCUUGGGCCCCu -3'
miRNA:   3'- -UCUUUCGGACGUUUCGGAACCCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.