miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7056 3' -52.8 NC_001876.1 + 28998 0.66 0.680255
Target:  5'- uCUGGUcggUCCGUGGUUCGCacagGUCGAGg -3'
miRNA:   3'- cGAUUA---AGGUACCGGGCGa---CGGUUCg -5'
7056 3' -52.8 NC_001876.1 + 15499 0.66 0.680255
Target:  5'- gGCggc--CCA-GGCCCaGCUGCUAccGGCu -3'
miRNA:   3'- -CGauuaaGGUaCCGGG-CGACGGU--UCG- -5'
7056 3' -52.8 NC_001876.1 + 28810 0.66 0.673292
Target:  5'- -----aUCCGagauaauagggugacUGuGCCCGCUggGCCAGGCc -3'
miRNA:   3'- cgauuaAGGU---------------AC-CGGGCGA--CGGUUCG- -5'
7056 3' -52.8 NC_001876.1 + 24009 0.67 0.656989
Target:  5'- uGCUGccaaaugcCCAUGGCa-GuCUGCCAAGUa -3'
miRNA:   3'- -CGAUuaa-----GGUACCGggC-GACGGUUCG- -5'
7056 3' -52.8 NC_001876.1 + 17506 0.67 0.645311
Target:  5'- aCUGcUUUCAUGGCgCC-CUGCUcGGCa -3'
miRNA:   3'- cGAUuAAGGUACCG-GGcGACGGuUCG- -5'
7056 3' -52.8 NC_001876.1 + 11197 0.67 0.633619
Target:  5'- gGCUuuAUUCCAaagccaGCCCaGC-GCCGAGCa -3'
miRNA:   3'- -CGAu-UAAGGUac----CGGG-CGaCGGUUCG- -5'
7056 3' -52.8 NC_001876.1 + 30101 0.67 0.633619
Target:  5'- -aUAAUuugUCCuguUGGCCgGCUGCCcaaaacuaAGGCc -3'
miRNA:   3'- cgAUUA---AGGu--ACCGGgCGACGG--------UUCG- -5'
7056 3' -52.8 NC_001876.1 + 14874 0.67 0.610242
Target:  5'- aGCUGGcgccgCCAUGGCCauggccgcgucUGCUGCgAuAGCg -3'
miRNA:   3'- -CGAUUaa---GGUACCGG-----------GCGACGgU-UCG- -5'
7056 3' -52.8 NC_001876.1 + 22315 0.68 0.58695
Target:  5'- gGCU---UCCAgcaaGGCCCGgCUGgCCGccGGCa -3'
miRNA:   3'- -CGAuuaAGGUa---CCGGGC-GAC-GGU--UCG- -5'
7056 3' -52.8 NC_001876.1 + 28516 0.68 0.552357
Target:  5'- uGCUAAUUUgGaGGCCCGCU-CC-GGUg -3'
miRNA:   3'- -CGAUUAAGgUaCCGGGCGAcGGuUCG- -5'
7056 3' -52.8 NC_001876.1 + 16237 0.71 0.41238
Target:  5'- cGCUGccgcggCCGcGGCgCUGCUGCCcGGCg -3'
miRNA:   3'- -CGAUuaa---GGUaCCG-GGCGACGGuUCG- -5'
7056 3' -52.8 NC_001876.1 + 9726 0.71 0.373865
Target:  5'- gGCcAGUUUugCGUGGCCgGCUGUCuGGCg -3'
miRNA:   3'- -CGaUUAAG--GUACCGGgCGACGGuUCG- -5'
7056 3' -52.8 NC_001876.1 + 20987 0.72 0.364625
Target:  5'- uGUUG--UCCAUGGCCCuaaGCgGCCA-GCg -3'
miRNA:   3'- -CGAUuaAGGUACCGGG---CGaCGGUuCG- -5'
7056 3' -52.8 NC_001876.1 + 22279 1.15 0.000323
Target:  5'- uGCUAAUUCCAUGGCCCGCUGCCAAGCa -3'
miRNA:   3'- -CGAUUAAGGUACCGGGCGACGGUUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.