miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7056 5' -61.7 NC_001876.1 + 18010 0.66 0.276569
Target:  5'- -cGCUUCCAGCuagccguGGGCgacaaccgggugCUGGacaUGGCCa -3'
miRNA:   3'- gcCGAAGGUCGu------UCCG------------GGCCg--ACCGG- -5'
7056 5' -61.7 NC_001876.1 + 4959 0.66 0.269649
Target:  5'- uCGGCa-CCAGCAGGcucaGCCUGaggcgcucGCUGGUCa -3'
miRNA:   3'- -GCCGaaGGUCGUUC----CGGGC--------CGACCGG- -5'
7056 5' -61.7 NC_001876.1 + 22641 0.66 0.262869
Target:  5'- gCGGUUUCagaAGCccuAGGCgCGGCcgcuucGGCCc -3'
miRNA:   3'- -GCCGAAGg--UCGu--UCCGgGCCGa-----CCGG- -5'
7056 5' -61.7 NC_001876.1 + 27237 0.66 0.256228
Target:  5'- gGGCgccaCacaGGCGAGGCCgGGUcguUGGCa -3'
miRNA:   3'- gCCGaa--Gg--UCGUUCCGGgCCG---ACCGg -5'
7056 5' -61.7 NC_001876.1 + 29952 0.66 0.249725
Target:  5'- gCGcGC-UCCaAGUAaaaguuGGGCCCGGCaUGcGCCu -3'
miRNA:   3'- -GC-CGaAGG-UCGU------UCCGGGCCG-AC-CGG- -5'
7056 5' -61.7 NC_001876.1 + 16873 0.68 0.186902
Target:  5'- gCGGCUcuugcuccCCGGCAAGGCUCccgacccauGCUGaGCCa -3'
miRNA:   3'- -GCCGAa-------GGUCGUUCCGGGc--------CGAC-CGG- -5'
7056 5' -61.7 NC_001876.1 + 4885 0.7 0.142309
Target:  5'- -uGCUgaCCAGCGAGcGCCUcaGGCUGaGCCu -3'
miRNA:   3'- gcCGAa-GGUCGUUC-CGGG--CCGAC-CGG- -5'
7056 5' -61.7 NC_001876.1 + 24861 0.7 0.138428
Target:  5'- uGGCccUCCgaAGCcugagccgcggAAGGCCCGGCUG-CCg -3'
miRNA:   3'- gCCGa-AGG--UCG-----------UUCCGGGCCGACcGG- -5'
7056 5' -61.7 NC_001876.1 + 14765 0.7 0.134645
Target:  5'- uGGCgagggCCcGCAGGGUgggCCGGCgcgcGGCCg -3'
miRNA:   3'- gCCGaa---GGuCGUUCCG---GGCCGa---CCGG- -5'
7056 5' -61.7 NC_001876.1 + 23592 0.71 0.123515
Target:  5'- uCGGCUUCUGGCAGcgccucagcuuccGGUUCGGC-GGUCg -3'
miRNA:   3'- -GCCGAAGGUCGUU-------------CCGGGCCGaCCGG- -5'
7056 5' -61.7 NC_001876.1 + 28458 0.73 0.088279
Target:  5'- aGGCUgggacCCAGaaguagggaGAGGCCCGcGCUGGUg -3'
miRNA:   3'- gCCGAa----GGUCg--------UUCCGGGC-CGACCGg -5'
7056 5' -61.7 NC_001876.1 + 26552 0.73 0.076522
Target:  5'- -aGCUUCUAugcuGCAAGGCCCGGguCUGaGCCu -3'
miRNA:   3'- gcCGAAGGU----CGUUCCGGGCC--GAC-CGG- -5'
7056 5' -61.7 NC_001876.1 + 22378 0.74 0.072252
Target:  5'- cCGGCggCCAGCcGGGCCUuGCUGgaaGCCg -3'
miRNA:   3'- -GCCGaaGGUCGuUCCGGGcCGAC---CGG- -5'
7056 5' -61.7 NC_001876.1 + 22313 1.11 0.000076
Target:  5'- uCGGCUUCCAGCAAGGCCCGGCUGGCCg -3'
miRNA:   3'- -GCCGAAGGUCGUUCCGGGCCGACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.