Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7056 | 5' | -61.7 | NC_001876.1 | + | 29952 | 0.66 | 0.249725 |
Target: 5'- gCGcGC-UCCaAGUAaaaguuGGGCCCGGCaUGcGCCu -3' miRNA: 3'- -GC-CGaAGG-UCGU------UCCGGGCCG-AC-CGG- -5' |
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7056 | 5' | -61.7 | NC_001876.1 | + | 28458 | 0.73 | 0.088279 |
Target: 5'- aGGCUgggacCCAGaaguagggaGAGGCCCGcGCUGGUg -3' miRNA: 3'- gCCGAa----GGUCg--------UUCCGGGC-CGACCGg -5' |
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7056 | 5' | -61.7 | NC_001876.1 | + | 27237 | 0.66 | 0.256228 |
Target: 5'- gGGCgccaCacaGGCGAGGCCgGGUcguUGGCa -3' miRNA: 3'- gCCGaa--Gg--UCGUUCCGGgCCG---ACCGg -5' |
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7056 | 5' | -61.7 | NC_001876.1 | + | 26552 | 0.73 | 0.076522 |
Target: 5'- -aGCUUCUAugcuGCAAGGCCCGGguCUGaGCCu -3' miRNA: 3'- gcCGAAGGU----CGUUCCGGGCC--GAC-CGG- -5' |
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7056 | 5' | -61.7 | NC_001876.1 | + | 24861 | 0.7 | 0.138428 |
Target: 5'- uGGCccUCCgaAGCcugagccgcggAAGGCCCGGCUG-CCg -3' miRNA: 3'- gCCGa-AGG--UCG-----------UUCCGGGCCGACcGG- -5' |
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7056 | 5' | -61.7 | NC_001876.1 | + | 23592 | 0.71 | 0.123515 |
Target: 5'- uCGGCUUCUGGCAGcgccucagcuuccGGUUCGGC-GGUCg -3' miRNA: 3'- -GCCGAAGGUCGUU-------------CCGGGCCGaCCGG- -5' |
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7056 | 5' | -61.7 | NC_001876.1 | + | 22641 | 0.66 | 0.262869 |
Target: 5'- gCGGUUUCagaAGCccuAGGCgCGGCcgcuucGGCCc -3' miRNA: 3'- -GCCGAAGg--UCGu--UCCGgGCCGa-----CCGG- -5' |
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7056 | 5' | -61.7 | NC_001876.1 | + | 22378 | 0.74 | 0.072252 |
Target: 5'- cCGGCggCCAGCcGGGCCUuGCUGgaaGCCg -3' miRNA: 3'- -GCCGaaGGUCGuUCCGGGcCGAC---CGG- -5' |
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7056 | 5' | -61.7 | NC_001876.1 | + | 22313 | 1.11 | 0.000076 |
Target: 5'- uCGGCUUCCAGCAAGGCCCGGCUGGCCg -3' miRNA: 3'- -GCCGAAGGUCGUUCCGGGCCGACCGG- -5' |
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7056 | 5' | -61.7 | NC_001876.1 | + | 18010 | 0.66 | 0.276569 |
Target: 5'- -cGCUUCCAGCuagccguGGGCgacaaccgggugCUGGacaUGGCCa -3' miRNA: 3'- gcCGAAGGUCGu------UCCG------------GGCCg--ACCGG- -5' |
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7056 | 5' | -61.7 | NC_001876.1 | + | 16873 | 0.68 | 0.186902 |
Target: 5'- gCGGCUcuugcuccCCGGCAAGGCUCccgacccauGCUGaGCCa -3' miRNA: 3'- -GCCGAa-------GGUCGUUCCGGGc--------CGAC-CGG- -5' |
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7056 | 5' | -61.7 | NC_001876.1 | + | 14765 | 0.7 | 0.134645 |
Target: 5'- uGGCgagggCCcGCAGGGUgggCCGGCgcgcGGCCg -3' miRNA: 3'- gCCGaa---GGuCGUUCCG---GGCCGa---CCGG- -5' |
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7056 | 5' | -61.7 | NC_001876.1 | + | 4959 | 0.66 | 0.269649 |
Target: 5'- uCGGCa-CCAGCAGGcucaGCCUGaggcgcucGCUGGUCa -3' miRNA: 3'- -GCCGaaGGUCGUUC----CGGGC--------CGACCGG- -5' |
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7056 | 5' | -61.7 | NC_001876.1 | + | 4885 | 0.7 | 0.142309 |
Target: 5'- -uGCUgaCCAGCGAGcGCCUcaGGCUGaGCCu -3' miRNA: 3'- gcCGAa-GGUCGUUC-CGGG--CCGAC-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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