miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7059 3' -60 NC_001876.1 + 19270 0.66 0.371288
Target:  5'- cGGGCCuGCGuuaCCGCUCC-CAGCu -3'
miRNA:   3'- cCCUGGuCGUccaGGCGAGGuGUCGc -5'
7059 3' -60 NC_001876.1 + 14545 0.66 0.362619
Target:  5'- uGGGGCagccgcaccgguCGGguGGgucgCCGCgcaaCCGCAGCu -3'
miRNA:   3'- -CCCUG------------GUCguCCa---GGCGa---GGUGUCGc -5'
7059 3' -60 NC_001876.1 + 20868 0.67 0.321417
Target:  5'- aGGGACCcaacAGCGccgccugcGGUCUGUUCUGCuGCa -3'
miRNA:   3'- -CCCUGG----UCGU--------CCAGGCGAGGUGuCGc -5'
7059 3' -60 NC_001876.1 + 16299 0.67 0.313608
Target:  5'- cGGG-CAGCAGcG-CCGCggCCGCGGCa -3'
miRNA:   3'- cCCUgGUCGUC-CaGGCGa-GGUGUCGc -5'
7059 3' -60 NC_001876.1 + 11548 0.68 0.245933
Target:  5'- gGGGGCCGGCcuaGGGUCUgugguagccuugaauGCcuUCCugAGCa -3'
miRNA:   3'- -CCCUGGUCG---UCCAGG---------------CG--AGGugUCGc -5'
7059 3' -60 NC_001876.1 + 34257 0.68 0.243394
Target:  5'- cGGGGCaaagGGCAGGgcuacaaCCGCgCCACAagGCGg -3'
miRNA:   3'- -CCCUGg---UCGUCCa------GGCGaGGUGU--CGC- -5'
7059 3' -60 NC_001876.1 + 22911 0.7 0.186757
Target:  5'- uGGGugUGGguGGUCUGggCCGCgaAGCGg -3'
miRNA:   3'- -CCCugGUCguCCAGGCgaGGUG--UCGC- -5'
7059 3' -60 NC_001876.1 + 14783 0.71 0.150137
Target:  5'- uGGGCCGGCGcgcGG-CCGCUaUCGCAGCa -3'
miRNA:   3'- cCCUGGUCGU---CCaGGCGA-GGUGUCGc -5'
7059 3' -60 NC_001876.1 + 28798 0.72 0.13401
Target:  5'- gGGGAaaauGCAGGcCCgagcccaGCUCCACGGCGa -3'
miRNA:   3'- -CCCUggu-CGUCCaGG-------CGAGGUGUCGC- -5'
7059 3' -60 NC_001876.1 + 25138 1.09 0.000181
Target:  5'- uGGGACCAGCAGGUCCGCUCCACAGCGc -3'
miRNA:   3'- -CCCUGGUCGUCCAGGCGAGGUGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.