miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7059 5' -52.5 NC_001876.1 + 27462 0.66 0.740905
Target:  5'- uGCGCUGGAGGgcAGuGuuGGC-GCAGg -3'
miRNA:   3'- cCGCGAUCUCCauUCuCc-UCGaUGUC- -5'
7059 5' -52.5 NC_001876.1 + 178 0.66 0.740905
Target:  5'- cGGCGCgc-GGGgcGGGGcGAGggGCGGa -3'
miRNA:   3'- -CCGCGaucUCCauUCUC-CUCgaUGUC- -5'
7059 5' -52.5 NC_001876.1 + 25483 0.66 0.718461
Target:  5'- gGGCGCccgagcacgcuUGGAGG-AAGAGGAGgaggGCGa -3'
miRNA:   3'- -CCGCG-----------AUCUCCaUUCUCCUCga--UGUc -5'
7059 5' -52.5 NC_001876.1 + 3139 0.66 0.707087
Target:  5'- aGGUGg-GGAGGuUGAGGGGAGCcgUAGu -3'
miRNA:   3'- -CCGCgaUCUCC-AUUCUCCUCGauGUC- -5'
7059 5' -52.5 NC_001876.1 + 22814 0.67 0.660902
Target:  5'- aGGUGCUgcGGcAGGcgaacuuGGGGGAGCgGCGGg -3'
miRNA:   3'- -CCGCGA--UC-UCCau-----UCUCCUCGaUGUC- -5'
7059 5' -52.5 NC_001876.1 + 26088 0.7 0.457058
Target:  5'- uGGCGCUcaaaucGcGGgcGGAGGcGCUGCGGg -3'
miRNA:   3'- -CCGCGAu-----CuCCauUCUCCuCGAUGUC- -5'
7059 5' -52.5 NC_001876.1 + 135 0.71 0.446597
Target:  5'- cGGCGCUGGgcGGGgcuGAGG-GCgGCGGg -3'
miRNA:   3'- -CCGCGAUC--UCCauuCUCCuCGaUGUC- -5'
7059 5' -52.5 NC_001876.1 + 34312 0.71 0.446597
Target:  5'- cGGCGCUGGgcGGGgcuGAGG-GCgGCGGg -3'
miRNA:   3'- -CCGCGAUC--UCCauuCUCCuCGaUGUC- -5'
7059 5' -52.5 NC_001876.1 + 8831 0.71 0.426085
Target:  5'- -cCGCUGGAGGgggaagAAGAGGAGgaGgAGg -3'
miRNA:   3'- ccGCGAUCUCCa-----UUCUCCUCgaUgUC- -5'
7059 5' -52.5 NC_001876.1 + 20211 0.72 0.385847
Target:  5'- aGGCcaGUUGGGGGUAGGGguggcccucgcgcGGAGCgcgGCAGa -3'
miRNA:   3'- -CCG--CGAUCUCCAUUCU-------------CCUCGa--UGUC- -5'
7059 5' -52.5 NC_001876.1 + 28429 0.83 0.068107
Target:  5'- cGCGCUGGuGGUcgaGAGGGGAGCUugGGu -3'
miRNA:   3'- cCGCGAUCuCCA---UUCUCCUCGAugUC- -5'
7059 5' -52.5 NC_001876.1 + 25173 1.1 0.000777
Target:  5'- gGGCGCUAGAGGUAAGAGGAGCUACAGc -3'
miRNA:   3'- -CCGCGAUCUCCAUUCUCCUCGAUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.