miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7060 5' -55.6 NC_001876.1 + 26087 0.66 0.58033
Target:  5'- gAGGCAuuuCCaCGUgGGUGGuGC-CCACCa -3'
miRNA:   3'- gUUUGUu--GG-GCA-CCACC-CGuGGUGGg -5'
7060 5' -55.6 NC_001876.1 + 13421 0.66 0.557971
Target:  5'- uCGGGCAGCCUuaGG-GGGaACCACUCg -3'
miRNA:   3'- -GUUUGUUGGGcaCCaCCCgUGGUGGG- -5'
7060 5' -55.6 NC_001876.1 + 11150 0.66 0.546881
Target:  5'- gAAGCGcCCCGaagccUGGGCcCCGCCCc -3'
miRNA:   3'- gUUUGUuGGGCacc--ACCCGuGGUGGG- -5'
7060 5' -55.6 NC_001876.1 + 16159 0.66 0.540261
Target:  5'- aCGAGCucgggugugcgccuGCCCGccGUccGGGCGCCGCCg -3'
miRNA:   3'- -GUUUGu-------------UGGGCacCA--CCCGUGGUGGg -5'
7060 5' -55.6 NC_001876.1 + 28717 0.66 0.534765
Target:  5'- gCAAACAACagccucgCCGUGGagcUGGGCucggGCCugCa -3'
miRNA:   3'- -GUUUGUUG-------GGCACC---ACCCG----UGGugGg -5'
7060 5' -55.6 NC_001876.1 + 22038 0.67 0.503308
Target:  5'- cCAcACAGCCCGUG--GGGCuCCACg- -3'
miRNA:   3'- -GUuUGUUGGGCACcaCCCGuGGUGgg -5'
7060 5' -55.6 NC_001876.1 + 19656 0.68 0.461312
Target:  5'- uGGGCAGCguuCCGUGGcUGGaGUcUCACCCg -3'
miRNA:   3'- gUUUGUUG---GGCACC-ACC-CGuGGUGGG- -5'
7060 5' -55.6 NC_001876.1 + 22105 0.69 0.408675
Target:  5'- gGGACGACCuCGUGGagccccacgggcugUGuggucuGGCGCCACCa -3'
miRNA:   3'- gUUUGUUGG-GCACC--------------AC------CCGUGGUGGg -5'
7060 5' -55.6 NC_001876.1 + 14768 0.69 0.392601
Target:  5'- -cGAgGGCCCGcagGGUGGGCcggcgcgcgGCCGCUa -3'
miRNA:   3'- guUUgUUGGGCa--CCACCCG---------UGGUGGg -5'
7060 5' -55.6 NC_001876.1 + 14546 0.7 0.322687
Target:  5'- gGGGCAGCcgcaCCGgucgGGUGGGuCGCCGCgCa -3'
miRNA:   3'- gUUUGUUG----GGCa---CCACCC-GUGGUGgG- -5'
7060 5' -55.6 NC_001876.1 + 8853 0.71 0.276634
Target:  5'- cCGAACGACCCGUcggcgucgGGUGGGCAaggggagACUCu -3'
miRNA:   3'- -GUUUGUUGGGCA--------CCACCCGUgg-----UGGG- -5'
7060 5' -55.6 NC_001876.1 + 4642 0.74 0.179443
Target:  5'- aCGAGCuACUgGcuaUGGgGGGCGCCACCCu -3'
miRNA:   3'- -GUUUGuUGGgC---ACCaCCCGUGGUGGG- -5'
7060 5' -55.6 NC_001876.1 + 14008 0.75 0.155936
Target:  5'- -uAGCAAuuacCCCGUGGUGGGCACagaACUUu -3'
miRNA:   3'- guUUGUU----GGGCACCACCCGUGg--UGGG- -5'
7060 5' -55.6 NC_001876.1 + 22783 0.76 0.134864
Target:  5'- gCGGGCGGCUCGgggcugcUGGUGGGCGucauuuCCACCCc -3'
miRNA:   3'- -GUUUGUUGGGC-------ACCACCCGU------GGUGGG- -5'
7060 5' -55.6 NC_001876.1 + 2011 0.79 0.082453
Target:  5'- cCAGGCuAGCCCGgGGUGGGCugUcCCCg -3'
miRNA:   3'- -GUUUG-UUGGGCaCCACCCGugGuGGG- -5'
7060 5' -55.6 NC_001876.1 + 26012 1.12 0.000315
Target:  5'- uCAAACAACCCGUGGUGGGCACCACCCa -3'
miRNA:   3'- -GUUUGUUGGGCACCACCCGUGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.