miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7062 5' -56.1 NC_001876.1 + 8174 0.66 0.528148
Target:  5'- cUGGCCCCGUCACUuugAACCuGaaaGaGAGGu -3'
miRNA:   3'- -ACUGGGGCAGUGG---UUGGuCga-C-CUUC- -5'
7062 5' -56.1 NC_001876.1 + 23617 0.66 0.517237
Target:  5'- gGAgCCCGagGCCAcgGCCcaGGCuuUGGAAGa -3'
miRNA:   3'- aCUgGGGCagUGGU--UGG--UCG--ACCUUC- -5'
7062 5' -56.1 NC_001876.1 + 11656 0.66 0.495696
Target:  5'- cUGGCCCCucucCACCAccGCUGGCUgugugcucaGGAAGg -3'
miRNA:   3'- -ACUGGGGca--GUGGU--UGGUCGA---------CCUUC- -5'
7062 5' -56.1 NC_001876.1 + 22398 0.67 0.450847
Target:  5'- aGGCCgCCGcUCccgcccugccggcgGCCAGCCGggccuuGCUGGAAGc -3'
miRNA:   3'- aCUGG-GGC-AG--------------UGGUUGGU------CGACCUUC- -5'
7062 5' -56.1 NC_001876.1 + 28244 0.67 0.443757
Target:  5'- cGGCCUCaUCGgaGGCCAGCggugGGAAGa -3'
miRNA:   3'- aCUGGGGcAGUggUUGGUCGa---CCUUC- -5'
7062 5' -56.1 NC_001876.1 + 13011 0.67 0.433737
Target:  5'- aGGCCCCaGcCACCAccgccucauaaGCCGGCggcgGGAc- -3'
miRNA:   3'- aCUGGGG-CaGUGGU-----------UGGUCGa---CCUuc -5'
7062 5' -56.1 NC_001876.1 + 21942 0.7 0.323791
Target:  5'- aGACCCCGcauaagacaaagaUCACCAccaACCGG-UGGAAu -3'
miRNA:   3'- aCUGGGGC-------------AGUGGU---UGGUCgACCUUc -5'
7062 5' -56.1 NC_001876.1 + 25146 0.72 0.22478
Target:  5'- uUGACCgCCGUCGCCGcuACCGuuGCgGGAAu -3'
miRNA:   3'- -ACUGG-GGCAGUGGU--UGGU--CGaCCUUc -5'
7062 5' -56.1 NC_001876.1 + 18078 0.73 0.207102
Target:  5'- aGcACCCgguUGUCGCCcacGGCUAGCUGGAAGc -3'
miRNA:   3'- aC-UGGG---GCAGUGG---UUGGUCGACCUUC- -5'
7062 5' -56.1 NC_001876.1 + 30195 1.08 0.000495
Target:  5'- cUGACCCCGUCACCAACCAGCUGGAAGu -3'
miRNA:   3'- -ACUGGGGCAGUGGUUGGUCGACCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.