miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7070 5' -59.6 NC_001885.1 + 2199 0.66 0.114833
Target:  5'- aGGGuucgGACCCCcuccccgaACCUAGGGuaaCACUGAc -3'
miRNA:   3'- gCCU----UUGGGG--------UGGGUCCCug-GUGGCU- -5'
7070 5' -59.6 NC_001885.1 + 790 0.66 0.11849
Target:  5'- uGGccACCCCACgCCGaauGuGGGCCACuCGGa -3'
miRNA:   3'- gCCuuUGGGGUG-GGU---C-CCUGGUG-GCU- -5'
7070 5' -59.6 NC_001885.1 + 3506 0.66 0.11849
Target:  5'- gGGAAGCaa-ACCCAGGGAUCcagaGCCu- -3'
miRNA:   3'- gCCUUUGgggUGGGUCCCUGG----UGGcu -5'
7070 5' -59.6 NC_001885.1 + 6555 0.76 0.016222
Target:  5'- aGGggGCCuuccuaaCCuuaaaugcuaccaACCCAGGGGCCACUGAg -3'
miRNA:   3'- gCCuuUGG-------GG-------------UGGGUCCCUGGUGGCU- -5'
7070 5' -59.6 NC_001885.1 + 163 1.08 0.000028
Target:  5'- uCGGAAACCCCACCCAGGGACCACCGAc -3'
miRNA:   3'- -GCCUUUGGGGUGGGUCCCUGGUGGCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.