miRNA display CGI


Results 1 - 5 of 5 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7076 5' -52.9 NC_001885.1 + 2662 1.09 0.000097
Target:  5'- aCUAGCCAAUCAAGUCCCACCAGUGGUa -3'
miRNA:   3'- -GAUCGGUUAGUUCAGGGUGGUCACCA- -5'
7076 5' -52.9 NC_001885.1 + 2693 0.74 0.065487
Target:  5'- -gAGCUaaGAUCAGGUgCCuCACCAGUGGc -3'
miRNA:   3'- gaUCGG--UUAGUUCA-GG-GUGGUCACCa -5'
7076 5' -52.9 NC_001885.1 + 4557 0.66 0.245005
Target:  5'- -gAGCCAAUCGAG-CCCgcucaagaaaagACCAGgccgagGGa -3'
miRNA:   3'- gaUCGGUUAGUUCaGGG------------UGGUCa-----CCa -5'
7076 5' -52.9 NC_001885.1 + 224 0.66 0.260491
Target:  5'- gCUGGCCAGcUUAccUCCCGuuGGUGGg -3'
miRNA:   3'- -GAUCGGUU-AGUucAGGGUggUCACCa -5'
7076 5' -52.9 NC_001885.1 + 6880 0.71 0.109067
Target:  5'- -aGGCCAGUgcugCAAG-CCCACCAGcuaUGGUu -3'
miRNA:   3'- gaUCGGUUA----GUUCaGGGUGGUC---ACCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.