miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7103 3' -56.8 NC_001895.1 + 2897 0.66 0.510581
Target:  5'- aGCUGgaaacagCGCGACG-GCUGGGACaGCg-- -3'
miRNA:   3'- -CGGCa------GUGCUGCgCGACUCUG-CGacu -5'
7103 3' -56.8 NC_001895.1 + 29824 0.66 0.507389
Target:  5'- cGUCGUUcuggugauaugaauAUGACGCGCgccGAGAUGCg-- -3'
miRNA:   3'- -CGGCAG--------------UGCUGCGCGa--CUCUGCGacu -5'
7103 3' -56.8 NC_001895.1 + 62 0.66 0.507389
Target:  5'- aGCgCGUCGUGACGgcacuuagucugccCGUUGAGGCGUUGu -3'
miRNA:   3'- -CG-GCAGUGCUGC--------------GCGACUCUGCGACu -5'
7103 3' -56.8 NC_001895.1 + 30165 0.66 0.489465
Target:  5'- gGCC-UCAgCGAUGgGaacuUGAGGCGCUGGc -3'
miRNA:   3'- -CGGcAGU-GCUGCgCg---ACUCUGCGACU- -5'
7103 3' -56.8 NC_001895.1 + 13596 0.67 0.458587
Target:  5'- cUCGUCGCcuGACGCaCUGAauACGCUGAa -3'
miRNA:   3'- cGGCAGUG--CUGCGcGACUc-UGCGACU- -5'
7103 3' -56.8 NC_001895.1 + 20290 0.67 0.448526
Target:  5'- aCCGUCAgcgUGAUGCGCUGGuGCGUg-- -3'
miRNA:   3'- cGGCAGU---GCUGCGCGACUcUGCGacu -5'
7103 3' -56.8 NC_001895.1 + 6430 0.67 0.448526
Target:  5'- aGCUGUgGCGGgauaUGCGCUG-GGCGgUGGc -3'
miRNA:   3'- -CGGCAgUGCU----GCGCGACuCUGCgACU- -5'
7103 3' -56.8 NC_001895.1 + 22955 0.68 0.372758
Target:  5'- uGCCGguuCGugGCGCUGuccuGACGgUGu -3'
miRNA:   3'- -CGGCaguGCugCGCGACu---CUGCgACu -5'
7103 3' -56.8 NC_001895.1 + 18476 0.69 0.338277
Target:  5'- aCCGUCGCGGCGaaucaGCguaGuGACGcCUGAc -3'
miRNA:   3'- cGGCAGUGCUGCg----CGa--CuCUGC-GACU- -5'
7103 3' -56.8 NC_001895.1 + 5348 0.7 0.306173
Target:  5'- uGCCGUgggugaACGGCGUGCUG-GA-GCUGGg -3'
miRNA:   3'- -CGGCAg-----UGCUGCGCGACuCUgCGACU- -5'
7103 3' -56.8 NC_001895.1 + 18524 0.77 0.102425
Target:  5'- gGCCGaCACGAUG-GCUGAGGCGCa-- -3'
miRNA:   3'- -CGGCaGUGCUGCgCGACUCUGCGacu -5'
7103 3' -56.8 NC_001895.1 + 111 1.11 0.000311
Target:  5'- uGCCGUCACGACGCGCUGAGACGCUGAa -3'
miRNA:   3'- -CGGCAGUGCUGCGCGACUCUGCGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.