miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7105 3' -53.5 NC_001895.1 + 9282 0.66 0.655379
Target:  5'- cGCGUccccugcuCGGCuuUACCGGUGAGGa- -3'
miRNA:   3'- uCGCAau------GUCGugGUGGCCAUUCCag -5'
7105 3' -53.5 NC_001895.1 + 21713 0.66 0.620478
Target:  5'- gGGCugaaaGCGGCAUuugCGCCGGUGGGGg- -3'
miRNA:   3'- -UCGcaa--UGUCGUG---GUGGCCAUUCCag -5'
7105 3' -53.5 NC_001895.1 + 22532 0.67 0.597248
Target:  5'- gAGCGUggucaucguCAGCuuGCCGCCGGUcAGuUCg -3'
miRNA:   3'- -UCGCAau-------GUCG--UGGUGGCCAuUCcAG- -5'
7105 3' -53.5 NC_001895.1 + 10433 0.67 0.597248
Target:  5'- cGCG--GCAGCgACCGgCGuUAAGGUCg -3'
miRNA:   3'- uCGCaaUGUCG-UGGUgGCcAUUCCAG- -5'
7105 3' -53.5 NC_001895.1 + 23715 0.67 0.596089
Target:  5'- gGGCGUUGCggaguucucuaucAGCcugGCUACCGGUcGGG-Ca -3'
miRNA:   3'- -UCGCAAUG-------------UCG---UGGUGGCCAuUCCaG- -5'
7105 3' -53.5 NC_001895.1 + 12001 0.67 0.562676
Target:  5'- aAGCGUauaucACGGCACagCACCGGcUGGGG-Cg -3'
miRNA:   3'- -UCGCAa----UGUCGUG--GUGGCC-AUUCCaG- -5'
7105 3' -53.5 NC_001895.1 + 29393 0.68 0.528664
Target:  5'- cGCGauauaccccGCAGCACCGCCcuGGuUAAGGUg -3'
miRNA:   3'- uCGCaa-------UGUCGUGGUGG--CC-AUUCCAg -5'
7105 3' -53.5 NC_001895.1 + 3962 0.68 0.506416
Target:  5'- cAGCGccGCAGCaaaGCCACCGGc--GGUg -3'
miRNA:   3'- -UCGCaaUGUCG---UGGUGGCCauuCCAg -5'
7105 3' -53.5 NC_001895.1 + 5540 0.69 0.483496
Target:  5'- uAGCGcUUGCGGCcaugcgcgcucacGCUGCCGGUGA-GUCu -3'
miRNA:   3'- -UCGC-AAUGUCG-------------UGGUGGCCAUUcCAG- -5'
7105 3' -53.5 NC_001895.1 + 11889 0.69 0.473827
Target:  5'- gGGCGUUAC-GCACCACagccagcAGGUCu -3'
miRNA:   3'- -UCGCAAUGuCGUGGUGgccau--UCCAG- -5'
7105 3' -53.5 NC_001895.1 + 1403 0.74 0.252585
Target:  5'- cAGCGgacGCAGCGCCACCuaUGAGGcCa -3'
miRNA:   3'- -UCGCaa-UGUCGUGGUGGccAUUCCaG- -5'
7105 3' -53.5 NC_001895.1 + 1749 0.76 0.175483
Target:  5'- uGCGUggUACuGGCACCGCCGGUGGuGGcCg -3'
miRNA:   3'- uCGCA--AUG-UCGUGGUGGCCAUU-CCaG- -5'
7105 3' -53.5 NC_001895.1 + 911 1.11 0.000554
Target:  5'- aAGCGUUACAGCACCACCGGUAAGGUCa -3'
miRNA:   3'- -UCGCAAUGUCGUGGUGGCCAUUCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.