miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7105 5' -47.6 NC_001895.1 + 28679 0.66 0.950592
Target:  5'- cAGACgggCAauGGCAGAAUAUGCCUGc -3'
miRNA:   3'- cUUUGga-GUggCCGUUUUAUAUGGGC- -5'
7105 5' -47.6 NC_001895.1 + 29883 0.66 0.945551
Target:  5'- gGAAAgCUCACCGGUGGug-AUACUUc -3'
miRNA:   3'- -CUUUgGAGUGGCCGUUuuaUAUGGGc -5'
7105 5' -47.6 NC_001895.1 + 19117 0.66 0.945551
Target:  5'- -cGACgaUACCGGCGAAAcgGUGgCCGu -3'
miRNA:   3'- cuUUGgaGUGGCCGUUUUa-UAUgGGC- -5'
7105 5' -47.6 NC_001895.1 + 10399 0.66 0.934488
Target:  5'- -cGugCagACCGGCGGcAUGUGCaCCGa -3'
miRNA:   3'- cuUugGagUGGCCGUUuUAUAUG-GGC- -5'
7105 5' -47.6 NC_001895.1 + 6879 0.67 0.922098
Target:  5'- cGAGACaaaacCACCGaGCAAcAUGcGCCCGa -3'
miRNA:   3'- -CUUUGga---GUGGC-CGUUuUAUaUGGGC- -5'
7105 5' -47.6 NC_001895.1 + 26509 0.67 0.915403
Target:  5'- ---uCCUCGCUGGCAGGAUAcAUgUGa -3'
miRNA:   3'- cuuuGGAGUGGCCGUUUUAUaUGgGC- -5'
7105 5' -47.6 NC_001895.1 + 8997 0.67 0.915403
Target:  5'- cGAAACgUCugCGGCAGAGUcaGCagCGu -3'
miRNA:   3'- -CUUUGgAGugGCCGUUUUAuaUGg-GC- -5'
7105 5' -47.6 NC_001895.1 + 13015 0.67 0.908378
Target:  5'- aGAAACCgcccaccuCCGGCGGAAUAaccaGCUCGg -3'
miRNA:   3'- -CUUUGGagu-----GGCCGUUUUAUa---UGGGC- -5'
7105 5' -47.6 NC_001895.1 + 23164 0.69 0.84846
Target:  5'- aGGAGCCUUcCCGGCGGGAauugagcguCCCGc -3'
miRNA:   3'- -CUUUGGAGuGGCCGUUUUauau-----GGGC- -5'
7105 5' -47.6 NC_001895.1 + 12709 0.69 0.821145
Target:  5'- uAAGCCacacCACCGGCGAAcagAUAgCCGg -3'
miRNA:   3'- cUUUGGa---GUGGCCGUUUua-UAUgGGC- -5'
7105 5' -47.6 NC_001895.1 + 2015 0.7 0.789807
Target:  5'- aGAAGCC-CACCGGCAAGGgcguUAUGaCUGa -3'
miRNA:   3'- -CUUUGGaGUGGCCGUUUU----AUAUgGGC- -5'
7105 5' -47.6 NC_001895.1 + 23430 0.7 0.783314
Target:  5'- uGGAGCCUaCACCgguguaacGGCAAAAUGgcuacacacuaaagACCCGa -3'
miRNA:   3'- -CUUUGGA-GUGG--------CCGUUUUAUa-------------UGGGC- -5'
7105 5' -47.6 NC_001895.1 + 28050 0.71 0.710464
Target:  5'- --uGCCgcaggCACCGGUAAGAUGUuuaCCGg -3'
miRNA:   3'- cuuUGGa----GUGGCCGUUUUAUAug-GGC- -5'
7105 5' -47.6 NC_001895.1 + 5845 0.72 0.662751
Target:  5'- cGGAGCgUgaCACCGGCAAAacGUGgacGCCCGa -3'
miRNA:   3'- -CUUUGgA--GUGGCCGUUU--UAUa--UGGGC- -5'
7105 5' -47.6 NC_001895.1 + 23661 0.73 0.590405
Target:  5'- -cAGCCUCACCGGCc--AUGUAUUCa -3'
miRNA:   3'- cuUUGGAGUGGCCGuuuUAUAUGGGc -5'
7105 5' -47.6 NC_001895.1 + 876 1.09 0.003469
Target:  5'- gGAAACCUCACCGGCAAAAUAUACCCGc -3'
miRNA:   3'- -CUUUGGAGUGGCCGUUUUAUAUGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.