miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7107 5' -58.8 NC_001895.1 + 4893 0.66 0.404589
Target:  5'- gUCAGCggCCAGCAuuuCGCUGUUguCCUg -3'
miRNA:   3'- gGGUCGa-GGUCGU---GCGGCAAguGGGu -5'
7107 5' -58.8 NC_001895.1 + 8837 0.66 0.386158
Target:  5'- cCCCcGCcgCCGGa--GCCGgUCACCCGc -3'
miRNA:   3'- -GGGuCGa-GGUCgugCGGCaAGUGGGU- -5'
7107 5' -58.8 NC_001895.1 + 5490 0.66 0.386158
Target:  5'- cUCCAGCgcaCCGGCAauauCGCCGg-UAUCCAg -3'
miRNA:   3'- -GGGUCGa--GGUCGU----GCGGCaaGUGGGU- -5'
7107 5' -58.8 NC_001895.1 + 19365 0.67 0.359571
Target:  5'- gUCAGC-CUGGCugGCCGguuaACCCu -3'
miRNA:   3'- gGGUCGaGGUCGugCGGCaag-UGGGu -5'
7107 5' -58.8 NC_001895.1 + 51 0.67 0.326156
Target:  5'- uUCAGCgUCuCAGCGCGUCGUgacggCACUUAg -3'
miRNA:   3'- gGGUCG-AG-GUCGUGCGGCAa----GUGGGU- -5'
7107 5' -58.8 NC_001895.1 + 2062 0.68 0.310333
Target:  5'- uUCGGCggcgCUGGCGCGUCcccgguuaaacaGUUCACCCGa -3'
miRNA:   3'- gGGUCGa---GGUCGUGCGG------------CAAGUGGGU- -5'
7107 5' -58.8 NC_001895.1 + 29912 0.68 0.310333
Target:  5'- aCCGGCUCCcacaccuucugAGCACGCCGagcagUGCUUAa -3'
miRNA:   3'- gGGUCGAGG-----------UCGUGCGGCaa---GUGGGU- -5'
7107 5' -58.8 NC_001895.1 + 18089 0.68 0.295101
Target:  5'- aUCCAGUcCCGGCACGCCGagaaUACgCGg -3'
miRNA:   3'- -GGGUCGaGGUCGUGCGGCaa--GUGgGU- -5'
7107 5' -58.8 NC_001895.1 + 721 0.68 0.284789
Target:  5'- aUCCGGCUCCAGCAggugaaacacggaGCCGggCGCg-- -3'
miRNA:   3'- -GGGUCGAGGUCGUg------------CGGCaaGUGggu -5'
7107 5' -58.8 NC_001895.1 + 5431 0.69 0.259583
Target:  5'- aCCGGCgauauugCCGGUGCGCUGgagaUUGCCCGu -3'
miRNA:   3'- gGGUCGa------GGUCGUGCGGCa---AGUGGGU- -5'
7107 5' -58.8 NC_001895.1 + 1374 0.7 0.227632
Target:  5'- gCCgCAGCgaggaagCCAGcCACGCCGaccUCGCCUg -3'
miRNA:   3'- -GG-GUCGa------GGUC-GUGCGGCa--AGUGGGu -5'
7107 5' -58.8 NC_001895.1 + 12493 0.7 0.210103
Target:  5'- -gCGGCUCCAccaCACGCCGgauugCACCUAu -3'
miRNA:   3'- ggGUCGAGGUc--GUGCGGCaa---GUGGGU- -5'
7107 5' -58.8 NC_001895.1 + 1579 0.71 0.178521
Target:  5'- uUCCAGCUCguGCGC-UCGUUCuauCCCGc -3'
miRNA:   3'- -GGGUCGAGguCGUGcGGCAAGu--GGGU- -5'
7107 5' -58.8 NC_001895.1 + 17702 0.76 0.085566
Target:  5'- cUCCAGCaCCuGCACGCCGUgaugauagUCACUCAu -3'
miRNA:   3'- -GGGUCGaGGuCGUGCGGCA--------AGUGGGU- -5'
7107 5' -58.8 NC_001895.1 + 19362 0.76 0.083122
Target:  5'- ---uGCUCCAGCcgaucgACGCCGUUCACCUu -3'
miRNA:   3'- ggguCGAGGUCG------UGCGGCAAGUGGGu -5'
7107 5' -58.8 NC_001895.1 + 5412 1.09 0.000215
Target:  5'- gCCCAGCUCCAGCACGCCGUUCACCCAc -3'
miRNA:   3'- -GGGUCGAGGUCGUGCGGCAAGUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.