miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7111 3' -55.4 NC_001895.1 + 5854 0.66 0.538519
Target:  5'- -aCACCG-GCAaaACGUGgaCGCCCGAa-- -3'
miRNA:   3'- ugGUGGCuCGU--UGUAC--GCGGGCUauu -5'
7111 3' -55.4 NC_001895.1 + 25685 0.66 0.52731
Target:  5'- uCCugaguCCGGGCAAauUGCGCCCGc--- -3'
miRNA:   3'- uGGu----GGCUCGUUguACGCGGGCuauu -5'
7111 3' -55.4 NC_001895.1 + 5697 0.66 0.509562
Target:  5'- uGCCGCCGGugcgcuggcgcaccuGCAACGUGCgacacaGCUCGAc-- -3'
miRNA:   3'- -UGGUGGCU---------------CGUUGUACG------CGGGCUauu -5'
7111 3' -55.4 NC_001895.1 + 3823 0.68 0.421145
Target:  5'- cGCCACUGAGCAGCGccuCGCUgaGAUGGa -3'
miRNA:   3'- -UGGUGGCUCGUUGUac-GCGGg-CUAUU- -5'
7111 3' -55.4 NC_001895.1 + 28285 0.68 0.421145
Target:  5'- -gCACCGGGCuuuuauUGCGCCgGAUGu -3'
miRNA:   3'- ugGUGGCUCGuugu--ACGCGGgCUAUu -5'
7111 3' -55.4 NC_001895.1 + 26463 0.68 0.373105
Target:  5'- aACaGCC-AGCAGCuAUGCGCCgGAUAAu -3'
miRNA:   3'- -UGgUGGcUCGUUG-UACGCGGgCUAUU- -5'
7111 3' -55.4 NC_001895.1 + 8841 0.69 0.346123
Target:  5'- cGCCGCCgGAGCcgguCAccCGCCCGAUGGa -3'
miRNA:   3'- -UGGUGG-CUCGuu--GUacGCGGGCUAUU- -5'
7111 3' -55.4 NC_001895.1 + 10391 0.7 0.320568
Target:  5'- cGCUGCCGcgugcagaccGGCGGCAUGUGCaCCGAc-- -3'
miRNA:   3'- -UGGUGGC----------UCGUUGUACGCG-GGCUauu -5'
7111 3' -55.4 NC_001895.1 + 9341 0.7 0.288733
Target:  5'- cACCgguaaaGCCGAGCAGgGgacGCGCCgGAUAAu -3'
miRNA:   3'- -UGG------UGGCUCGUUgUa--CGCGGgCUAUU- -5'
7111 3' -55.4 NC_001895.1 + 1771 0.71 0.252501
Target:  5'- -aCACCGuGGCGACA-GCGCCgGAUGc -3'
miRNA:   3'- ugGUGGC-UCGUUGUaCGCGGgCUAUu -5'
7111 3' -55.4 NC_001895.1 + 8832 0.71 0.245719
Target:  5'- cUCACUGAcCAGCGUGCGCUCGGUc- -3'
miRNA:   3'- uGGUGGCUcGUUGUACGCGGGCUAuu -5'
7111 3' -55.4 NC_001895.1 + 3976 0.76 0.116832
Target:  5'- aGCCACCGgcGGUGGCGUGaCGCCCuGAUGAc -3'
miRNA:   3'- -UGGUGGC--UCGUUGUAC-GCGGG-CUAUU- -5'
7111 3' -55.4 NC_001895.1 + 6871 1.06 0.000684
Target:  5'- aACCACCGAGCAACAUGCGCCCGAUAAa -3'
miRNA:   3'- -UGGUGGCUCGUUGUACGCGGGCUAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.