miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7112 5' -58.8 NC_001895.1 + 17785 0.66 0.358957
Target:  5'- --uCCGCaucuGCAUCGCUGGCcGUG-CAGa -3'
miRNA:   3'- uacGGCG----UGUGGCGACCGuCACuGUC- -5'
7112 5' -58.8 NC_001895.1 + 21502 0.66 0.350231
Target:  5'- -cGCCaGUGCACCGCcGGCAaUGAUg- -3'
miRNA:   3'- uaCGG-CGUGUGGCGaCCGUcACUGuc -5'
7112 5' -58.8 NC_001895.1 + 7995 0.67 0.316854
Target:  5'- -aGCCuGCGCGCCucGCUGGaCAG-GGCGa -3'
miRNA:   3'- uaCGG-CGUGUGG--CGACC-GUCaCUGUc -5'
7112 5' -58.8 NC_001895.1 + 5919 0.67 0.308893
Target:  5'- -gGCgGCACGCCGgU--CAGUGACGGu -3'
miRNA:   3'- uaCGgCGUGUGGCgAccGUCACUGUC- -5'
7112 5' -58.8 NC_001895.1 + 3965 0.67 0.308893
Target:  5'- -cGCCGCAgCAaaGCcaccGGCGGUGGCGu -3'
miRNA:   3'- uaCGGCGU-GUggCGa---CCGUCACUGUc -5'
7112 5' -58.8 NC_001895.1 + 9012 0.67 0.308893
Target:  5'- -cGCCG-ACGCC-CUGaCGGUGACAGc -3'
miRNA:   3'- uaCGGCgUGUGGcGACcGUCACUGUC- -5'
7112 5' -58.8 NC_001895.1 + 8770 0.67 0.301085
Target:  5'- gAUGCUGaccgaGCGCaCGCUGGuCAGUGAgGu -3'
miRNA:   3'- -UACGGCg----UGUG-GCGACC-GUCACUgUc -5'
7112 5' -58.8 NC_001895.1 + 26502 0.67 0.301085
Target:  5'- uUGCCGUuCcUCGCUGGCAG-GAUAc -3'
miRNA:   3'- uACGGCGuGuGGCGACCGUCaCUGUc -5'
7112 5' -58.8 NC_001895.1 + 12753 0.67 0.27858
Target:  5'- cUGCCGgugcaGCAaaGCUGGCAGcGGCAa -3'
miRNA:   3'- uACGGCg----UGUggCGACCGUCaCUGUc -5'
7112 5' -58.8 NC_001895.1 + 7697 0.67 0.27858
Target:  5'- cUGCCGCcggaAUCGCUGGCcGUGAa-- -3'
miRNA:   3'- uACGGCGug--UGGCGACCGuCACUguc -5'
7112 5' -58.8 NC_001895.1 + 30532 0.68 0.24408
Target:  5'- cUGCCGCugACUgucaaGCUGGCAGUa---- -3'
miRNA:   3'- uACGGCGugUGG-----CGACCGUCAcuguc -5'
7112 5' -58.8 NC_001895.1 + 7941 0.69 0.225133
Target:  5'- cGUGuuGU-UAUCGCUGGCGGUGGCc- -3'
miRNA:   3'- -UACggCGuGUGGCGACCGUCACUGuc -5'
7112 5' -58.8 NC_001895.1 + 6942 1.07 0.000238
Target:  5'- gAUGCCGCACACCGCUGGCAGUGACAGg -3'
miRNA:   3'- -UACGGCGUGUGGCGACCGUCACUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.