Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 7114 | 3' | -59 | NC_001895.1 | + | 4029 | 0.73 | 0.130646 |
|
Target: 5'- gUCACCGCCACcGCCGGuGGCUuuGCUGCg -3' miRNA: 3'- -GGUGGUGGUGaUGGUC-UCGG--CGGCGg -5' |
|||||||
| 7114 | 3' | -59 | NC_001895.1 | + | 12210 | 0.73 | 0.127038 |
|
Target: 5'- cUCAUCACCGCU-UgAG-GUCGCCGCCg -3' miRNA: 3'- -GGUGGUGGUGAuGgUCuCGGCGGCGG- -5' |
|||||||
| 7114 | 3' | -59 | NC_001895.1 | + | 1704 | 0.74 | 0.110347 |
|
Target: 5'- gCCAgUACCACgcauCCGGcGCUGUCGCCa -3' miRNA: 3'- -GGUgGUGGUGau--GGUCuCGGCGGCGG- -5' |
|||||||
| 7114 | 3' | -59 | NC_001895.1 | + | 7681 | 0.75 | 0.104263 |
|
Target: 5'- ---aCGCUACggGCgGGAGCUGCCGCCg -3' miRNA: 3'- ggugGUGGUGa-UGgUCUCGGCGGCGG- -5' |
|||||||
| 7114 | 3' | -59 | NC_001895.1 | + | 8835 | 0.75 | 0.104263 |
|
Target: 5'- -aACCcCCGCcGCCGGAGCCGgucacCCGCCc -3' miRNA: 3'- ggUGGuGGUGaUGGUCUCGGC-----GGCGG- -5' |
|||||||
| 7114 | 3' | -59 | NC_001895.1 | + | 18237 | 0.76 | 0.087102 |
|
Target: 5'- aCCGCCACCGCguaUGCCaccgcccgugcgcuGGGGCUGCgCGCUa -3' miRNA: 3'- -GGUGGUGGUG---AUGG--------------UCUCGGCG-GCGG- -5' |
|||||||
| 7114 | 3' | -59 | NC_001895.1 | + | 5905 | 0.76 | 0.076086 |
|
Target: 5'- gCGCC-CCGC-GCCAGGGCgGCaCGCCg -3' miRNA: 3'- gGUGGuGGUGaUGGUCUCGgCG-GCGG- -5' |
|||||||
| 7114 | 3' | -59 | NC_001895.1 | + | 7826 | 1.12 | 0.000149 |
|
Target: 5'- gCCACCACCACUACCAGAGCCGCCGCCc -3' miRNA: 3'- -GGUGGUGGUGAUGGUCUCGGCGGCGG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home