miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7114 5' -54.4 NC_001895.1 + 8242 0.66 0.599233
Target:  5'- cUGuGCGCCGGUUGCAc---CAGCGcCc -3'
miRNA:   3'- uGC-CGUGGCCGACGUuuuuGUCGCuG- -5'
7114 5' -54.4 NC_001895.1 + 1121 0.66 0.587664
Target:  5'- cCGGCACCGGCU-CAccaaaGGUGAa -3'
miRNA:   3'- uGCCGUGGCCGAcGUuuuugUCGCUg -5'
7114 5' -54.4 NC_001895.1 + 8645 0.66 0.576137
Target:  5'- cCGGUGCUggcguGGCUGCGGGAAaauCAGCccGACa -3'
miRNA:   3'- uGCCGUGG-----CCGACGUUUUU---GUCG--CUG- -5'
7114 5' -54.4 NC_001895.1 + 19522 0.66 0.576137
Target:  5'- cUGGCugCGGUUGCAAAcuccgaAGuCGAUg -3'
miRNA:   3'- uGCCGugGCCGACGUUUuug---UC-GCUG- -5'
7114 5' -54.4 NC_001895.1 + 7453 0.66 0.564662
Target:  5'- cCGuaACCGGCacccgGCAGGGACGcccagauauuGCGACa -3'
miRNA:   3'- uGCcgUGGCCGa----CGUUUUUGU----------CGCUG- -5'
7114 5' -54.4 NC_001895.1 + 2065 0.66 0.564662
Target:  5'- gGCGGCGCUGGC-GCGuccccgguuAAACAGUucacccGACc -3'
miRNA:   3'- -UGCCGUGGCCGaCGUu--------UUUGUCG------CUG- -5'
7114 5' -54.4 NC_001895.1 + 19578 0.66 0.553247
Target:  5'- gACGGCACCGauGCUGaccGAGCAG-GAa -3'
miRNA:   3'- -UGCCGUGGC--CGACguuUUUGUCgCUg -5'
7114 5' -54.4 NC_001895.1 + 22539 0.67 0.541902
Target:  5'- gAUGGCACCGGCaUGauuu-ACGGCa-- -3'
miRNA:   3'- -UGCCGUGGCCG-ACguuuuUGUCGcug -5'
7114 5' -54.4 NC_001895.1 + 2976 0.67 0.497385
Target:  5'- gGCGGCGCU-GCUGUAcuGGCAGgGGu -3'
miRNA:   3'- -UGCCGUGGcCGACGUuuUUGUCgCUg -5'
7114 5' -54.4 NC_001895.1 + 15288 0.68 0.465102
Target:  5'- uGCGGCAuuuCCGGCcauucaggauuUGCAGGAuccacACGGCuGACc -3'
miRNA:   3'- -UGCCGU---GGCCG-----------ACGUUUU-----UGUCG-CUG- -5'
7114 5' -54.4 NC_001895.1 + 20399 0.69 0.423829
Target:  5'- -gGGCgcuGCCGGUgugGgGAuuGCGGCGGCg -3'
miRNA:   3'- ugCCG---UGGCCGa--CgUUuuUGUCGCUG- -5'
7114 5' -54.4 NC_001895.1 + 27602 0.7 0.375454
Target:  5'- uGCGGUgcuucugcGCUGGuUUGCGAAGAguGUGACg -3'
miRNA:   3'- -UGCCG--------UGGCC-GACGUUUUUguCGCUG- -5'
7114 5' -54.4 NC_001895.1 + 23440 0.7 0.366237
Target:  5'- gGCGGuCGCCGucGCUGCGGGuuAUGGUGACc -3'
miRNA:   3'- -UGCC-GUGGC--CGACGUUUu-UGUCGCUG- -5'
7114 5' -54.4 NC_001895.1 + 12016 0.7 0.366237
Target:  5'- cACaGCACCGGCUGgG---GC-GCGACa -3'
miRNA:   3'- -UGcCGUGGCCGACgUuuuUGuCGCUG- -5'
7114 5' -54.4 NC_001895.1 + 7748 0.72 0.282838
Target:  5'- cCGGUGCCguGGC-GCAGAcgGGCGGCGGCu -3'
miRNA:   3'- uGCCGUGG--CCGaCGUUU--UUGUCGCUG- -5'
7114 5' -54.4 NC_001895.1 + 10458 0.73 0.240433
Target:  5'- uCGGUgcacaugccGCCGGuCUGCAcgcGGCAGCGACc -3'
miRNA:   3'- uGCCG---------UGGCC-GACGUuu-UUGUCGCUG- -5'
7114 5' -54.4 NC_001895.1 + 4576 0.73 0.23326
Target:  5'- gGCGGUcgGCUGGCUGCAgaaauaccgcaauGAAGCAcCGGCg -3'
miRNA:   3'- -UGCCG--UGGCCGACGU-------------UUUUGUcGCUG- -5'
7114 5' -54.4 NC_001895.1 + 13716 0.75 0.166668
Target:  5'- gACGGCGCUGGCgggGCuugcuACuGCGGCa -3'
miRNA:   3'- -UGCCGUGGCCGa--CGuuuu-UGuCGCUG- -5'
7114 5' -54.4 NC_001895.1 + 20641 0.79 0.089591
Target:  5'- cUGcGCACCGGCUGCAucaucuccGAGGCGGCGGu -3'
miRNA:   3'- uGC-CGUGGCCGACGU--------UUUUGUCGCUg -5'
7114 5' -54.4 NC_001895.1 + 7790 1.1 0.000449
Target:  5'- cACGGCACCGGCUGCAAAAACAGCGACg -3'
miRNA:   3'- -UGCCGUGGCCGACGUUUUUGUCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.