miRNA: 3'- ugAGUAUU--UGGAGAUUUguaa-CUCGC- -5'
miRNA: 3'- -UGAgUAUuUGgaGAUUUGUAACUCGC- -5'
miRNA: 3'- -UGAGUAUUUGGAGAUUUGUAACUCGC- -5'
Results 1 - 3 of 3 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 7115 | 3' | -43.1 | NC_001895.1 | + | 6031 | 0.69 | 0.982443 |
|
Target: 5'- -aUCAUGAcuACCUCUGAAaagucGGGCGg -3' miRNA: 3'- ugAGUAUU--UGGAGAUUUguaa-CUCGC- -5' |
|||||||
| 7115 | 3' | -43.1 | NC_001895.1 | + | 9374 | 0.71 | 0.937751 |
|
Target: 5'- gGCUgAUGcGCaaUUAAACAUUGAGCGg -3' miRNA: 3'- -UGAgUAUuUGgaGAUUUGUAACUCGC- -5' |
|||||||
| 7115 | 3' | -43.1 | NC_001895.1 | + | 9471 | 1.12 | 0.007525 |
|
Target: 5'- cACUCAUAAACCUCUAAACAUUGAGCGa -3' miRNA: 3'- -UGAGUAUUUGGAGAUUUGUAACUCGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home