miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7116 5' -52 NC_001895.1 + 7283 0.66 0.799411
Target:  5'- aUGcGGcCAGaacagguaaagcugcUGAUAGcGACCGGAGGCCg -3'
miRNA:   3'- gGCaCC-GUC---------------AUUGUC-UUGGCCUUCGG- -5'
7116 5' -52 NC_001895.1 + 10895 0.66 0.774591
Target:  5'- cCCGgcgacaGCGGcGGCAcAACCGGGAGUCc -3'
miRNA:   3'- -GGCac----CGUCaUUGUcUUGGCCUUCGG- -5'
7116 5' -52 NC_001895.1 + 17657 0.66 0.773535
Target:  5'- uCCGUGGUuaaugGGUGAguGGuauuuucagugcGCCGGAgaugucaGGCUa -3'
miRNA:   3'- -GGCACCG-----UCAUUguCU------------UGGCCU-------UCGG- -5'
7116 5' -52 NC_001895.1 + 21800 0.66 0.763963
Target:  5'- gCGUGGCAGUggUuuaaaaaccuGAuugccCCGGucaAAGCCa -3'
miRNA:   3'- gGCACCGUCAuuGu---------CUu----GGCC---UUCGG- -5'
7116 5' -52 NC_001895.1 + 21152 0.66 0.757514
Target:  5'- gCUG-GGCAGU-ACcGAGCCGGuuuuucucaaaacuGGCCu -3'
miRNA:   3'- -GGCaCCGUCAuUGuCUUGGCCu-------------UCGG- -5'
7116 5' -52 NC_001895.1 + 13027 0.68 0.640113
Target:  5'- gCCGUGGCG--AACAuGGCCGaAAGCUa -3'
miRNA:   3'- -GGCACCGUcaUUGUcUUGGCcUUCGG- -5'
7116 5' -52 NC_001895.1 + 7093 0.69 0.582481
Target:  5'- aCGUGaUAGUcaccgGACuGGACgGGAAGCCg -3'
miRNA:   3'- gGCACcGUCA-----UUGuCUUGgCCUUCGG- -5'
7116 5' -52 NC_001895.1 + 10481 0.69 0.582481
Target:  5'- uCCGUGGgGG-AACAGGugCuGAuucuGGCCg -3'
miRNA:   3'- -GGCACCgUCaUUGUCUugGcCU----UCGG- -5'
7116 5' -52 NC_001895.1 + 5349 0.7 0.537124
Target:  5'- gCCGUGGguG-AACGGcguGCUGG-AGCUg -3'
miRNA:   3'- -GGCACCguCaUUGUCu--UGGCCuUCGG- -5'
7116 5' -52 NC_001895.1 + 23162 0.7 0.537124
Target:  5'- ---aGGCGauagccacccGUAACAG-GCUGGAAGCCa -3'
miRNA:   3'- ggcaCCGU----------CAUUGUCuUGGCCUUCGG- -5'
7116 5' -52 NC_001895.1 + 1748 0.71 0.503922
Target:  5'- nCGUGGUAcUGGCAccGCCGGugguGGCCg -3'
miRNA:   3'- gGCACCGUcAUUGUcuUGGCCu---UCGG- -5'
7116 5' -52 NC_001895.1 + 6932 0.72 0.44044
Target:  5'- aCCGcUGGCAGUGACAGGucaGGAAacuGCa -3'
miRNA:   3'- -GGC-ACCGUCAUUGUCUuggCCUU---CGg -5'
7116 5' -52 NC_001895.1 + 12318 0.72 0.424287
Target:  5'- gCCGUGGCuggcGUgggcguuuucggucGACAGGugggaugaaaagugGCCGGAAGCg -3'
miRNA:   3'- -GGCACCGu---CA--------------UUGUCU--------------UGGCCUUCGg -5'
7116 5' -52 NC_001895.1 + 19726 0.73 0.400734
Target:  5'- aUGUGGCAGUGAUAuuucACUGGccGCCa -3'
miRNA:   3'- gGCACCGUCAUUGUcu--UGGCCuuCGG- -5'
7116 5' -52 NC_001895.1 + 22069 0.74 0.336999
Target:  5'- aCGUGGCGGUAugAGuuCUGGcGGCg -3'
miRNA:   3'- gGCACCGUCAUugUCuuGGCCuUCGg -5'
7116 5' -52 NC_001895.1 + 1769 0.74 0.336999
Target:  5'- aCCGUGGCG---ACAGcGCCGGAuGCg -3'
miRNA:   3'- -GGCACCGUcauUGUCuUGGCCUuCGg -5'
7116 5' -52 NC_001895.1 + 5115 0.76 0.239056
Target:  5'- aCCGgcuaaGGCGaccGCAGAGCCGGGAGCg -3'
miRNA:   3'- -GGCa----CCGUcauUGUCUUGGCCUUCGg -5'
7116 5' -52 NC_001895.1 + 10745 1.16 0.000436
Target:  5'- aCCGUGGCAGUAACAGAACCGGAAGCCg -3'
miRNA:   3'- -GGCACCGUCAUUGUCUUGGCCUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.