miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7117 3' -52.1 NC_001895.1 + 8904 0.66 0.761618
Target:  5'- cUC-CAUCGggcGGGUgacCGgcuCCGGCGGCGg -3'
miRNA:   3'- -AGuGUAGU---UCCA---GUaauGGCCGCCGU- -5'
7117 3' -52.1 NC_001895.1 + 20870 0.66 0.761618
Target:  5'- gCGCAUCGcucaugccGUCAaaAUCGGCGGCGg -3'
miRNA:   3'- aGUGUAGUuc------CAGUaaUGGCCGCCGU- -5'
7117 3' -52.1 NC_001895.1 + 6767 0.66 0.72832
Target:  5'- gUCGg--CAAGGUgcUUGCCGGUGGUg -3'
miRNA:   3'- -AGUguaGUUCCAguAAUGGCCGCCGu -5'
7117 3' -52.1 NC_001895.1 + 19040 0.66 0.716984
Target:  5'- gCGCAUCGucaucaaggccgAGGUC--UACCGGUGcGCu -3'
miRNA:   3'- aGUGUAGU------------UCCAGuaAUGGCCGC-CGu -5'
7117 3' -52.1 NC_001895.1 + 8552 0.66 0.705553
Target:  5'- gCAUAUCGGGGUUAguuuucagcACCGuGaCGGCAu -3'
miRNA:   3'- aGUGUAGUUCCAGUaa-------UGGC-C-GCCGU- -5'
7117 3' -52.1 NC_001895.1 + 28526 0.67 0.694041
Target:  5'- cUCACcUCuauGGUCAUguUGCUGGCGcuGCAc -3'
miRNA:   3'- -AGUGuAGuu-CCAGUA--AUGGCCGC--CGU- -5'
7117 3' -52.1 NC_001895.1 + 3652 0.67 0.682461
Target:  5'- gCGguUCAggGGGUUGUguuuUGCCGuGCGGCAg -3'
miRNA:   3'- aGUguAGU--UCCAGUA----AUGGC-CGCCGU- -5'
7117 3' -52.1 NC_001895.1 + 1737 0.68 0.635725
Target:  5'- gCACcgCc-GGUgGUgGCCGGUGGCAa -3'
miRNA:   3'- aGUGuaGuuCCAgUAaUGGCCGCCGU- -5'
7117 3' -52.1 NC_001895.1 + 4043 0.68 0.612285
Target:  5'- uUCGuCAUCAGGGcgUCAccgccaccGCCGGUGGCu -3'
miRNA:   3'- -AGU-GUAGUUCC--AGUaa------UGGCCGCCGu -5'
7117 3' -52.1 NC_001895.1 + 5761 0.7 0.520131
Target:  5'- gCACGUUGcAGGUgcgcCAgcgcACCGGCGGCAu -3'
miRNA:   3'- aGUGUAGU-UCCA----GUaa--UGGCCGCCGU- -5'
7117 3' -52.1 NC_001895.1 + 2657 0.7 0.497872
Target:  5'- uUCGgAUUAAGGUCugccucGUUGCCGGUcuGGCu -3'
miRNA:   3'- -AGUgUAGUUCCAG------UAAUGGCCG--CCGu -5'
7117 3' -52.1 NC_001895.1 + 8276 0.75 0.274284
Target:  5'- -aGCAUCAggcAGGUCAgcaccgUACCaGCGGCGa -3'
miRNA:   3'- agUGUAGU---UCCAGUa-----AUGGcCGCCGU- -5'
7117 3' -52.1 NC_001895.1 + 21430 0.76 0.226236
Target:  5'- -gGCGUCAAccaucGGcaUCAUUGCCGGCGGUg -3'
miRNA:   3'- agUGUAGUU-----CC--AGUAAUGGCCGCCGu -5'
7117 3' -52.1 NC_001895.1 + 11588 1.09 0.00097
Target:  5'- aUCACAUCAAGGUCAUUACCGGCGGCAc -3'
miRNA:   3'- -AGUGUAGUUCCAGUAAUGGCCGCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.