miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7120 5' -54.6 NC_001895.1 + 12292 0.66 0.595596
Target:  5'- cCGGAcACCUGUCcggcaaaucUGCuGCC-GUGGCu -3'
miRNA:   3'- uGCCUuUGGACAG---------ACG-CGGuCAUCGu -5'
7120 5' -54.6 NC_001895.1 + 7621 0.68 0.431192
Target:  5'- gACGGuuAUCUGUgUGguUGCCGGUGGUg -3'
miRNA:   3'- -UGCCuuUGGACAgAC--GCGGUCAUCGu -5'
7120 5' -54.6 NC_001895.1 + 4847 0.69 0.41124
Target:  5'- -gGGAAauACUUGUC--CGCCAGUAGCu -3'
miRNA:   3'- ugCCUU--UGGACAGacGCGGUCAUCGu -5'
7120 5' -54.6 NC_001895.1 + 8220 0.69 0.391871
Target:  5'- uACGGugcuGACCUGcCugaugcugUGCGCCGGUuGCAc -3'
miRNA:   3'- -UGCCu---UUGGACaG--------ACGCGGUCAuCGU- -5'
7120 5' -54.6 NC_001895.1 + 21673 0.71 0.281173
Target:  5'- cUGGGAGCCUGUCaGCGCauucuuuGGUGGUg -3'
miRNA:   3'- uGCCUUUGGACAGaCGCGg------UCAUCGu -5'
7120 5' -54.6 NC_001895.1 + 13792 0.9 0.014012
Target:  5'- uACGGAAACCUGUCUGC-CgCAGUAGCAa -3'
miRNA:   3'- -UGCCUUUGGACAGACGcG-GUCAUCGU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.