Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7122 | 3' | -57.8 | NC_001895.1 | + | 29024 | 0.67 | 0.411323 |
Target: 5'- aGGCGCGGUaagcgugauaaacAUCCccacauCACCcucUGCGGCg -3' miRNA: 3'- -CCGUGCCG-------------UAGGu-----GUGGccaACGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 28116 | 0.69 | 0.301177 |
Target: 5'- aGCAcCGGUAaaCAUcuuACCGGUgccUGCGGCa -3' miRNA: 3'- cCGU-GCCGUagGUG---UGGCCA---ACGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 21713 | 0.73 | 0.172698 |
Target: 5'- gGGCugaaaGCGGCAUuuGCGCCGGUgGgGGa -3' miRNA: 3'- -CCG-----UGCCGUAggUGUGGCCAaCgCCg -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 21558 | 0.67 | 0.414166 |
Target: 5'- gGGCAgucuucacgacgguUGGCAgugcuguuaugaccgCCAUcggggcuauuagcugGCCGGUUGUGGCc -3' miRNA: 3'- -CCGU--------------GCCGUa--------------GGUG---------------UGGCCAACGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 21256 | 0.66 | 0.431476 |
Target: 5'- cGCAgCGGUcaguuuGUCCAgCuuuCCGGUugagGCGGCa -3' miRNA: 3'- cCGU-GCCG------UAGGU-Gu--GGCCAa---CGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 20887 | 0.67 | 0.406611 |
Target: 5'- aGGUGCGGCAUaggucagcgcaucgcUCAUGCCGucaaaaucgGCGGCg -3' miRNA: 3'- -CCGUGCCGUA---------------GGUGUGGCcaa------CGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 20057 | 0.66 | 0.451196 |
Target: 5'- aGuCACGGCGagCUguGCACUGGUcuUGCGGa -3' miRNA: 3'- cC-GUGCCGUa-GG--UGUGGCCA--ACGCCg -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 19123 | 1.14 | 0.000127 |
Target: 5'- cGGCACGGCAUCCACACCGGUUGCGGCg -3' miRNA: 3'- -CCGUGCCGUAGGUGUGGCCAACGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 18960 | 0.69 | 0.316659 |
Target: 5'- gGGUgaACGGCAg-CGCACCGGUagaccuCGGCc -3' miRNA: 3'- -CCG--UGCCGUagGUGUGGCCAac----GCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 18884 | 0.67 | 0.412269 |
Target: 5'- uGCGCGGCAUUgcCAUCGGUca-GGCu -3' miRNA: 3'- cCGUGCCGUAGguGUGGCCAacgCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 18299 | 0.66 | 0.431476 |
Target: 5'- cGCACgGGCGguggCAUACgCGGUgGCGGUg -3' miRNA: 3'- cCGUG-CCGUag--GUGUG-GCCAaCGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 12822 | 0.69 | 0.304226 |
Target: 5'- cGGCGCGGUugCCgcugccagcuuugcuGCACCGGcaGUGGUg -3' miRNA: 3'- -CCGUGCCGuaGG---------------UGUGGCCaaCGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 12771 | 0.82 | 0.038426 |
Target: 5'- uGGCAgCGGCAaCCGCGCCGGgaagGCGGa -3' miRNA: 3'- -CCGU-GCCGUaGGUGUGGCCaa--CGCCg -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 12638 | 0.66 | 0.461239 |
Target: 5'- gGGaCAuuccCGGCuAUCUguuCGCCGGUggUGUGGCu -3' miRNA: 3'- -CC-GU----GCCG-UAGGu--GUGGCCA--ACGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 12010 | 0.7 | 0.245105 |
Target: 5'- -uCACGGCAca-GCACCGGcUGgGGCg -3' miRNA: 3'- ccGUGCCGUaggUGUGGCCaACgCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 11566 | 0.66 | 0.461239 |
Target: 5'- cGGCACaGGCcagCAuCACCGcccgUGCGGCc -3' miRNA: 3'- -CCGUG-CCGuagGU-GUGGCca--ACGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 10824 | 0.67 | 0.412269 |
Target: 5'- uGCGCGGCAacauugaaCACACCG---GCGGUg -3' miRNA: 3'- cCGUGCCGUag------GUGUGGCcaaCGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 8281 | 0.66 | 0.4714 |
Target: 5'- cGCACaGCAUCaggcaggucaGCACCGuaccaGCGGCg -3' miRNA: 3'- cCGUGcCGUAGg---------UGUGGCcaa--CGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 7871 | 0.66 | 0.431476 |
Target: 5'- aGCGCGGUaaaaAUCCAC-CCGGcaGCGaccaGCg -3' miRNA: 3'- cCGUGCCG----UAGGUGuGGCCaaCGC----CG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 7390 | 0.67 | 0.384474 |
Target: 5'- -uCugGGCGUCCcUGCCGGgUGcCGGUu -3' miRNA: 3'- ccGugCCGUAGGuGUGGCCaAC-GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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