Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7122 | 3' | -57.8 | NC_001895.1 | + | 29024 | 0.67 | 0.411323 |
Target: 5'- aGGCGCGGUaagcgugauaaacAUCCccacauCACCcucUGCGGCg -3' miRNA: 3'- -CCGUGCCG-------------UAGGu-----GUGGccaACGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 19123 | 1.14 | 0.000127 |
Target: 5'- cGGCACGGCAUCCACACCGGUUGCGGCg -3' miRNA: 3'- -CCGUGCCGUAGGUGUGGCCAACGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 8281 | 0.66 | 0.4714 |
Target: 5'- cGCACaGCAUCaggcaggucaGCACCGuaccaGCGGCg -3' miRNA: 3'- cCGUGcCGUAGg---------UGUGGCcaa--CGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 11566 | 0.66 | 0.461239 |
Target: 5'- cGGCACaGGCcagCAuCACCGcccgUGCGGCc -3' miRNA: 3'- -CCGUG-CCGuagGU-GUGGCca--ACGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 5172 | 0.66 | 0.451196 |
Target: 5'- cGGCucuGCGGUcgCCuuaGCCGG-UGUGGa -3' miRNA: 3'- -CCG---UGCCGuaGGug-UGGCCaACGCCg -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 20057 | 0.66 | 0.451196 |
Target: 5'- aGuCACGGCGagCUguGCACUGGUcuUGCGGa -3' miRNA: 3'- cC-GUGCCGUa-GG--UGUGGCCA--ACGCCg -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 7871 | 0.66 | 0.431476 |
Target: 5'- aGCGCGGUaaaaAUCCAC-CCGGcaGCGaccaGCg -3' miRNA: 3'- cCGUGCCG----UAGGUGuGGCCaaCGC----CG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 18299 | 0.66 | 0.431476 |
Target: 5'- cGCACgGGCGguggCAUACgCGGUgGCGGUg -3' miRNA: 3'- cCGUG-CCGUag--GUGUG-GCCAaCGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 21256 | 0.66 | 0.431476 |
Target: 5'- cGCAgCGGUcaguuuGUCCAgCuuuCCGGUugagGCGGCa -3' miRNA: 3'- cCGU-GCCG------UAGGU-Gu--GGCCAa---CGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 7307 | 0.71 | 0.208963 |
Target: 5'- cGGCAgGGCAagCuguUugCGGUaaUGCGGCc -3' miRNA: 3'- -CCGUgCCGUagGu--GugGCCA--ACGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 5865 | 0.69 | 0.316659 |
Target: 5'- gGGCGCGGguggCCGCuuUGGgcUGCGGCu -3' miRNA: 3'- -CCGUGCCgua-GGUGugGCCa-ACGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 4036 | 0.68 | 0.340991 |
Target: 5'- -uCAgGGCGUcaccgCCAcCGCCGGUggcuuugcUGCGGCg -3' miRNA: 3'- ccGUgCCGUA-----GGU-GUGGCCA--------ACGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 20887 | 0.67 | 0.406611 |
Target: 5'- aGGUGCGGCAUaggucagcgcaucgcUCAUGCCGucaaaaucgGCGGCg -3' miRNA: 3'- -CCGUGCCGUA---------------GGUGUGGCcaa------CGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 12822 | 0.69 | 0.304226 |
Target: 5'- cGGCGCGGUugCCgcugccagcuuugcuGCACCGGcaGUGGUg -3' miRNA: 3'- -CCGUGCCGuaGG---------------UGUGGCCaaCGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 6419 | 0.67 | 0.402866 |
Target: 5'- cGCACuGGCAUCCACACCGcGauaacGCu -3' miRNA: 3'- cCGUG-CCGUAGGUGUGGC-CaacgcCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 6708 | 0.67 | 0.364022 |
Target: 5'- gGGCGCGGUcugaacgucgggcaGUUCgACGgCGGUgccgUGUGGCa -3' miRNA: 3'- -CCGUGCCG--------------UAGG-UGUgGCCA----ACGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 28116 | 0.69 | 0.301177 |
Target: 5'- aGCAcCGGUAaaCAUcuuACCGGUgccUGCGGCa -3' miRNA: 3'- cCGU-GCCGUagGUG---UGGCCA---ACGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 6117 | 0.67 | 0.3936 |
Target: 5'- -uCAcCGGCucgUCGCcuGCCGGUUGCGGg -3' miRNA: 3'- ccGU-GCCGua-GGUG--UGGCCAACGCCg -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 1745 | 0.67 | 0.366646 |
Target: 5'- uGGUACuGGCA-CC--GCCGGUgGUGGCc -3' miRNA: 3'- -CCGUG-CCGUaGGugUGGCCAaCGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 18884 | 0.67 | 0.412269 |
Target: 5'- uGCGCGGCAUUgcCAUCGGUca-GGCu -3' miRNA: 3'- cCGUGCCGUAGguGUGGCCAacgCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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