Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7122 | 3' | -57.8 | NC_001895.1 | + | 1009 | 0.67 | 0.381763 |
Target: 5'- uGCACGGCAgcCCGCaggcuuuuugccagACCGGUaaagcugaccgGUGGCu -3' miRNA: 3'- cCGUGCCGUa-GGUG--------------UGGCCAa----------CGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 4036 | 0.68 | 0.340991 |
Target: 5'- -uCAgGGCGUcaccgCCAcCGCCGGUggcuuugcUGCGGCg -3' miRNA: 3'- ccGUgCCGUA-----GGU-GUGGCCA--------ACGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 12822 | 0.69 | 0.304226 |
Target: 5'- cGGCGCGGUugCCgcugccagcuuugcuGCACCGGcaGUGGUg -3' miRNA: 3'- -CCGUGCCGuaGG---------------UGUGGCCaaCGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 5865 | 0.69 | 0.316659 |
Target: 5'- gGGCGCGGguggCCGCuuUGGgcUGCGGCu -3' miRNA: 3'- -CCGUGCCgua-GGUGugGCCa-ACGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 28116 | 0.69 | 0.301177 |
Target: 5'- aGCAcCGGUAaaCAUcuuACCGGUgccUGCGGCa -3' miRNA: 3'- cCGU-GCCGUagGUG---UGGCCA---ACGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 18960 | 0.69 | 0.316659 |
Target: 5'- gGGUgaACGGCAg-CGCACCGGUagaccuCGGCc -3' miRNA: 3'- -CCG--UGCCGUagGUGUGGCCAac----GCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 4133 | 0.7 | 0.265048 |
Target: 5'- --aACGGCAUCgACGCCGGUgaUGUGuCg -3' miRNA: 3'- ccgUGCCGUAGgUGUGGCCA--ACGCcG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 12010 | 0.7 | 0.245105 |
Target: 5'- -uCACGGCAca-GCACCGGcUGgGGCg -3' miRNA: 3'- ccGUGCCGUaggUGUGGCCaACgCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 7307 | 0.71 | 0.208963 |
Target: 5'- cGGCAgGGCAagCuguUugCGGUaaUGCGGCc -3' miRNA: 3'- -CCGUgCCGUagGu--GugGCCA--ACGCCG- -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 21713 | 0.73 | 0.172698 |
Target: 5'- gGGCugaaaGCGGCAUuuGCGCCGGUgGgGGa -3' miRNA: 3'- -CCG-----UGCCGUAggUGUGGCCAaCgCCg -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 1354 | 0.74 | 0.127001 |
Target: 5'- uGGCGCuGCGUCCGCuGCUGGUcauggucuUGCGGa -3' miRNA: 3'- -CCGUGcCGUAGGUG-UGGCCA--------ACGCCg -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 12771 | 0.82 | 0.038426 |
Target: 5'- uGGCAgCGGCAaCCGCGCCGGgaagGCGGa -3' miRNA: 3'- -CCGU-GCCGUaGGUGUGGCCaa--CGCCg -5' |
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7122 | 3' | -57.8 | NC_001895.1 | + | 19123 | 1.14 | 0.000127 |
Target: 5'- cGGCACGGCAUCCACACCGGUUGCGGCg -3' miRNA: 3'- -CCGUGCCGUAGGUGUGGCCAACGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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