miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7122 5' -54.9 NC_001895.1 + 6116 0.66 0.604903
Target:  5'- --cCCGAagcgcGUCCGGGAAcguaugcGCC-UUGAGCa -3'
miRNA:   3'- auuGGCU-----UAGGCCCUU-------CGGuGGCUCG- -5'
7122 5' -54.9 NC_001895.1 + 5156 0.66 0.594631
Target:  5'- uUAGCCG-GUgUGGaGAAGUCACCGAc- -3'
miRNA:   3'- -AUUGGCuUAgGCC-CUUCGGUGGCUcg -5'
7122 5' -54.9 NC_001895.1 + 2130 0.67 0.549412
Target:  5'- gAACUGuuuaaCCGGGGAcgcgccagcGCCGCCGAacGCg -3'
miRNA:   3'- aUUGGCuua--GGCCCUU---------CGGUGGCU--CG- -5'
7122 5' -54.9 NC_001895.1 + 9180 0.67 0.538262
Target:  5'- cAAUgGAAUUuuacggCGGGAAGUCGCCGAa- -3'
miRNA:   3'- aUUGgCUUAG------GCCCUUCGGUGGCUcg -5'
7122 5' -54.9 NC_001895.1 + 1077 0.68 0.462806
Target:  5'- -uACCG-GUCUGGcaaaAAGCCugCGGGCu -3'
miRNA:   3'- auUGGCuUAGGCCc---UUCGGugGCUCG- -5'
7122 5' -54.9 NC_001895.1 + 6592 0.68 0.452473
Target:  5'- -cGCCGcaAAUCCGGGAcuGGCUgaACUGGGg -3'
miRNA:   3'- auUGGC--UUAGGCCCU--UCGG--UGGCUCg -5'
7122 5' -54.9 NC_001895.1 + 19591 0.69 0.432191
Target:  5'- cUGACCGAG-Ca-GGAAGUCGCCGcGCu -3'
miRNA:   3'- -AUUGGCUUaGgcCCUUCGGUGGCuCG- -5'
7122 5' -54.9 NC_001895.1 + 22509 0.69 0.393277
Target:  5'- -cGCCGGucaGUUCGGGAuaaAGCaCACCGgccAGCg -3'
miRNA:   3'- auUGGCU---UAGGCCCU---UCG-GUGGC---UCG- -5'
7122 5' -54.9 NC_001895.1 + 5197 0.71 0.290979
Target:  5'- aUGACCGcgcagCGGGAAGCCGCCccGCu -3'
miRNA:   3'- -AUUGGCuuag-GCCCUUCGGUGGcuCG- -5'
7122 5' -54.9 NC_001895.1 + 13875 0.72 0.276103
Target:  5'- aAACCGAG-CCGGGAa--CGCCGuGCa -3'
miRNA:   3'- aUUGGCUUaGGCCCUucgGUGGCuCG- -5'
7122 5' -54.9 NC_001895.1 + 21228 0.76 0.14603
Target:  5'- aAGCCucagaCGGGAAGaCCGCCGAGCu -3'
miRNA:   3'- aUUGGcuuagGCCCUUC-GGUGGCUCG- -5'
7122 5' -54.9 NC_001895.1 + 19083 1.11 0.000399
Target:  5'- aUAACCGAAUCCGGGAAGCCACCGAGCg -3'
miRNA:   3'- -AUUGGCUUAGGCCCUUCGGUGGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.