miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7123 3' -57 NC_001895.1 + 19422 0.66 0.438588
Target:  5'- gGGuUAACCGGCCagccAGGCUGacCGgaugaaaaucacAGGCCGa -3'
miRNA:   3'- aCU-AUUGGCCGG----UCCGAU--GC------------UCCGGU- -5'
7123 3' -57 NC_001895.1 + 22503 0.66 0.428625
Target:  5'- cUGAUGGCagaGGagGGGCggGCGuGGCCGu -3'
miRNA:   3'- -ACUAUUGg--CCggUCCGa-UGCuCCGGU- -5'
7123 3' -57 NC_001895.1 + 7288 0.67 0.409108
Target:  5'- cGGUAAUgCGGCCAGaacagguaaaGCUGCugauagcgaccgGAGGCCGu -3'
miRNA:   3'- aCUAUUG-GCCGGUC----------CGAUG------------CUCCGGU- -5'
7123 3' -57 NC_001895.1 + 11215 0.67 0.409108
Target:  5'- cGuUAACCGGCCAGcacaACGAcaccGGCCAg -3'
miRNA:   3'- aCuAUUGGCCGGUCcga-UGCU----CCGGU- -5'
7123 3' -57 NC_001895.1 + 22888 0.67 0.409108
Target:  5'- gGAUAACCGG---GGCUuuGAGGCUg -3'
miRNA:   3'- aCUAUUGGCCgguCCGAugCUCCGGu -5'
7123 3' -57 NC_001895.1 + 7663 0.67 0.409108
Target:  5'- aGAUAACCGucgccagaacGcCCAGGCaGCGAcaaaauugacGGCCAc -3'
miRNA:   3'- aCUAUUGGC----------C-GGUCCGaUGCU----------CCGGU- -5'
7123 3' -57 NC_001895.1 + 8646 0.67 0.398612
Target:  5'- cGGU-GCUGGCguGGCUGCGGGaaaaucaGCCc -3'
miRNA:   3'- aCUAuUGGCCGguCCGAUGCUC-------CGGu -5'
7123 3' -57 NC_001895.1 + 12688 0.69 0.288299
Target:  5'- aGAUAGCCGGgaaugucCCGGGUaAUGuucAGGCCAa -3'
miRNA:   3'- aCUAUUGGCC-------GGUCCGaUGC---UCCGGU- -5'
7123 3' -57 NC_001895.1 + 8893 0.7 0.246741
Target:  5'- gGGUGACCGGCUccGGCgGCGGGGguuCCGa -3'
miRNA:   3'- aCUAUUGGCCGGu-CCGaUGCUCC---GGU- -5'
7123 3' -57 NC_001895.1 + 21552 1.09 0.000323
Target:  5'- gUGAUAACCGGCCAGGCUACGAGGCCAa -3'
miRNA:   3'- -ACUAUUGGCCGGUCCGAUGCUCCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.