miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7123 5' -53.3 NC_001895.1 + 1700 0.66 0.64722
Target:  5'- --cGGUGCCAGUAccacgcauccGGCGCUgucgccacGGUGUgACg -3'
miRNA:   3'- cuaCUACGGUCAU----------UCGCGG--------UCACG-UG- -5'
7123 5' -53.3 NC_001895.1 + 7593 0.66 0.611749
Target:  5'- ---aGUGCCAGcaucAGCGCCAGcGaCACg -3'
miRNA:   3'- cuacUACGGUCau--UCGCGGUCaC-GUG- -5'
7123 5' -53.3 NC_001895.1 + 15557 0.66 0.608207
Target:  5'- aGUGAUGCCAaucauAGCGCCaauaccucuucgcaAGUGaCACu -3'
miRNA:   3'- cUACUACGGUcau--UCGCGG--------------UCAC-GUG- -5'
7123 5' -53.3 NC_001895.1 + 8236 0.67 0.564788
Target:  5'- -cUGAUGCUGu---GCGCCGGuUGCACc -3'
miRNA:   3'- cuACUACGGUcauuCGCGGUC-ACGUG- -5'
7123 5' -53.3 NC_001895.1 + 20588 0.67 0.553179
Target:  5'- aGAUGAUGCa-------GCCGGUGCGCa -3'
miRNA:   3'- -CUACUACGgucauucgCGGUCACGUG- -5'
7123 5' -53.3 NC_001895.1 + 10482 0.68 0.518822
Target:  5'- cGAUGGgucaGCCAcugAAGCcaGUCGGUGCACa -3'
miRNA:   3'- -CUACUa---CGGUca-UUCG--CGGUCACGUG- -5'
7123 5' -53.3 NC_001895.1 + 8310 0.68 0.496392
Target:  5'- --cGGUG-CAGgcgGGGCGCUGGUGCAa -3'
miRNA:   3'- cuaCUACgGUCa--UUCGCGGUCACGUg -5'
7123 5' -53.3 NC_001895.1 + 10400 0.68 0.485342
Target:  5'- cGAUaAUGCCAGUGcgaaucauguuGCG-CAGUGCGCg -3'
miRNA:   3'- -CUAcUACGGUCAUu----------CGCgGUCACGUG- -5'
7123 5' -53.3 NC_001895.1 + 22952 0.69 0.431983
Target:  5'- --gGGUGCCGGUucguGGCGCUguccugacGGUGUAUa -3'
miRNA:   3'- cuaCUACGGUCAu---UCGCGG--------UCACGUG- -5'
7123 5' -53.3 NC_001895.1 + 5691 0.69 0.421725
Target:  5'- uGGUGAUGCCGccgguGCGCUGGcGCACc -3'
miRNA:   3'- -CUACUACGGUcauu-CGCGGUCaCGUG- -5'
7123 5' -53.3 NC_001895.1 + 12153 0.71 0.336404
Target:  5'- cGAUGucgGCCAGUGGuGCaGCCAGUucgacacgcuGCACa -3'
miRNA:   3'- -CUACua-CGGUCAUU-CG-CGGUCA----------CGUG- -5'
7123 5' -53.3 NC_001895.1 + 20298 0.74 0.223663
Target:  5'- cGUGAUGCgCuGGUGcGUGUCAGUGCGCa -3'
miRNA:   3'- cUACUACG-G-UCAUuCGCGGUCACGUG- -5'
7123 5' -53.3 NC_001895.1 + 21518 1.09 0.0006
Target:  5'- cGAUGAUGCCAGUAAGCGCCAGUGCACc -3'
miRNA:   3'- -CUACUACGGUCAUUCGCGGUCACGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.